Colletotrichum fioriniae: CFIO01_07951
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Entry
CFIO01_07951 CDS
T04796
Name
(GenBank) DSHCT domain-containing protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cfj
Colletotrichum fioriniae
Pathway
cfj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFIO01_07951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfj03019
]
CFIO01_07951
03041 Spliceosome [BR:
cfj03041
]
CFIO01_07951
03009 Ribosome biogenesis [BR:
cfj03009
]
CFIO01_07951
03016 Transfer RNA biogenesis [BR:
cfj03016
]
CFIO01_07951
Enzymes [BR:
cfj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CFIO01_07951
Messenger RNA biogenesis [BR:
cfj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CFIO01_07951
Spliceosome [BR:
cfj03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CFIO01_07951
Complex C
U4/U6.U5 tri-SnRNP related factors
CFIO01_07951
Ribosome biogenesis [BR:
cfj03009
]
Eukaryotic type
Pre-60S particles
Helicases
CFIO01_07951
Transfer RNA biogenesis [BR:
cfj03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CFIO01_07951
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
ATPase_2
nSTAND3
AAA_16
Motif
Other DBs
NCBI-ProteinID:
EXF83474
UniProt:
A0A010RZ13
LinkDB
All DBs
AA seq
1118 aa
AA seq
DB search
MDELFDVFDAQPDAQNESHSEPEPETEVAEPPQKSRKKDKKSKKRKADGGIKNGVAEKPE
DDDMPDADETSKDGQDGQDADEAEDAAASSDEPQEPHKDKRRKKEDEAQPVLTDTFQTAQ
SREVAGAAVFTPAQDESLVLSHNIQHQVALPPDLDYEYIPLSEHKPPAEPARQYSFKLDP
FQALSVASIEREESVLVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKYRDF
EALFGDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVFDEIHYMRDKTR
GVVWEETIILLPDKVRYVFLSATIPNAFQFAEWIAKIHHQACHVVYTDFRPTPLQNYFFP
AGGNGIFLVVDEKGVFREGNFQKTMSLIEAGKGQDPNNANASWKGKGAKKQTQKGGQASD
MKSDISKIIRMIMQKSFHPVIVFNFSKKEVENLALQISHFQFNNDSEQAMVKTVFNNAIQ
SLSEADRELPQIQNLLPLLQKGIGVHHSGLLPILKETIEILFQESLIKVLVATETFSIGL
NMPAKTVVFTQTNKWDGVQRRPLTPSEYIQMSGRAGRRGLDTRGIVIMMIDDKMEPDTAR
GMVVGEQDRLNSAFYLGYNMILNLLRIEAISPEFMLERCFHQFQTGASVPALERDLVALQ
QERDSMSIADEATVKDYYNLRNQLEQYTSDMRAVIQHPEHCTDFMQPGRLVRIHDPKKTN
NTIGGTDFGWGVVANLIRRDRNRKQGEPEYPPQESCLIDVMMVVDQKSAPVAEGSRHLTS
DLPKGLVPYPNPEQPDNGARFEIIPCLLTCVKSISQIRVFMPKDCKSQSALNEVGNSLRE
VHRRFPDGLPILDPVENMGINDESFKALMRKIEMLEARLLTNPLHGSPLLPELYLQYRSK
EKLGEQIKSKKKDIARLHSIAQMDELKARKRVLRRLGFLNESEVVELKARVACEISSTEG
HELVLAELLFDRFFNELSPELIAATLSCFVLDEKLETAALREELAKPYREVQAKAKQVAK
VSRESKLELNEEEYLAGFKWQLMETVYSWAQGKPFADICKMTNAYEGSLIRLFRRLEELL
RQMGQGAKVMGSDELTQKFEDSLAKIRRDIVAAQSLYL
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atggacgagcttttcgatgttttcgacgctcaacctgacgcgcaaaacgagtcgcacagc
gagcccgagcctgagactgaggtcgccgagcctccgcagaagtcgcgcaagaaggacaag
aagagcaagaagcgaaaggccgatggcggaataaagaatggcgtcgccgaaaagccagag
gacgacgacatgcccgacgccgacgagacttccaaggacggtcaggacggtcaggacgct
gacgaagccgaagacgccgccgcttcttcggacgaaccgcaggagccccataaggacaag
cggaggaagaaggaagacgaggcccagcctgtcttgaccgacaccttccagactgctcag
tcacgagaggttgctggtgccgcagttttcacgccagctcaggacgaatcgctcgtcctg
tcccacaacatccagcaccaagtcgccctgccgcctgacctggactacgaatacattccc
ctctccgagcataagccgcctgcggagccagcacgccagtacagctttaagttagatccc
ttccaggcgctgtctgtcgcttcaatcgagagggaggagagtgtgttggtctctgcccac
acttctgccggaaagactgttgtcgccgaatacgcgattgcacaatgtctgaagcgcaac
cagagagtcatttacacgagtcccatcaaggccctcagcaaccagaaataccgagatttc
gaagcactgtttggtgatgtcggtctgatgactggtgatgtcacgatcaatcccaccgcc
agttgtttggtcatgacgaccgagattttgcgctccatgttgtaccgtggttccgagatc
atgcgcgaggttgcctgggtcgtctttgacgaaatccactacatgagagacaagaccaga
ggtgtcgtttgggaagagaccatcattcttcttcccgataaggtccgctacgtcttcctg
tccgccaccatccccaacgctttccagtttgcggaatggattgccaagatccaccaccag
gcgtgtcacgtcgtctacaccgatttccgtcccacaccactccaaaactatttctttcct
gccggcggtaacggtatcttcctggttgtcgacgagaagggcgtattcagagaaggcaac
ttccagaagaccatgtccctcatcgaggcgggcaagggtcaagaccccaacaacgcgaac
gcaagctggaagggcaagggagccaaaaagcagacgcaaaagggtggacaggcgtccgac
atgaagtctgatatctccaagattattcgcatgattatgcagaagagcttccaccccgtc
attgtcttcaacttcagcaaaaaggaggtcgagaacctggctctgcagatctctcatttc
cagttcaacaacgactcagagcaggccatggtcaagaccgtgttcaacaacgccatccag
agcttatctgaggctgaccgagagcttccccagatccagaacctgctccccctgttgcaa
aagggtatcggtgtgcatcactctggtcttctccccattctgaaggagaccatcgagatt
ctgttccaagagtctttgatcaaggtgcttgtcgcaaccgaaaccttctccattggtctc
aacatgcctgccaagactgtcgtcttcacccagactaacaagtgggatggagttcaacgg
agaccacttaccccgtccgagtacattcagatgtctggtcgtgccggtcgtagaggtctg
gatacgcgtggtattgtcattatgatgattgacgacaagatggagcctgatactgcccgc
ggcatggtcgtgggtgagcaggatcgtctcaattccgcattctacctcggctacaacatg
atcctcaacctcttgagaatcgaggctatttcccccgagttcatgcttgagcgttgcttc
catcagttccagacaggtgctagtgtcccagctttggaacgtgacttggtcgctctccag
caagagagggacagcatgtccatcgctgatgaggctacggtcaaggactactacaacctc
cgcaaccagctggagcagtacacaagcgatatgcgcgctgtcattcagcaccctgagcac
tgcaccgacttcatgcagcccggccgtcttgttcgcattcacgaccccaagaagaccaac
aacaccattggcggaaccgatttcggctggggtgtcgtggcgaacctgatccgccgcgac
cgcaaccgcaaacagggtgagcccgagtatcctcctcaggagtcctgcctcatcgacgtc
atgatggttgtagaccagaagagcgcacctgttgccgaaggctccaggcatttgacctct
gatctgcccaagggcctagttccctacccgaaccccgagcagccggacaatggagctcgt
ttcgagattatcccttgtctgctgacttgcgtcaagtccatcagccagatcagagtcttc
atgcccaaggattgcaaatctcaatccgcgcttaacgaggtcggcaactctcttcgggag
gttcacagacgcttccccgacggattgcccattttggaccccgttgagaacatgggcatc
aacgacgagtctttcaaagccctgatgaggaagattgagatgttggaggcgcgcctcctc
accaacccccttcacggatcaccgctgcttccagagctctaccttcagtatcgctccaag
gagaaactcggcgagcagatcaagtccaagaaaaaggacattgcaagactccacagcatt
gcgcagatggatgagctcaaggcgcgcaagcgtgtcctgcgccgtcttgggttccttaac
gagtctgaggttgtcgagcttaaggctcgtgtcgcctgcgagatctcatccaccgaaggt
cacgagcttgtccttgccgagcttctgtttgatcgcttcttcaacgagctctcccccgag
ctcattgctgctacactcagctgtttcgttctggatgagaagcttgagacagcagccctg
cgtgaggaattggccaagccctacagggaggttcaggccaaggctaagcaggtcgccaag
gtcagccgggagagcaagcttgagctcaacgaggaggagtacctggctggcttcaagtgg
caattgatggagactgtctactcatgggcacaaggcaagccgtttgcagatatctgcaaa
atgaccaacgcctatgagggctcccttatccgcctcttccgccgcctggaagagctactg
cgccagatgggccagggcgccaaggtcatgggcagcgatgagcttacccaaaagttcgag
gacagtctcgccaagatccgccgtgacatcgtcgcggcccagagtttgtacctgtaa
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