Colletotrichum fioriniae: CFIO01_08280
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Entry
CFIO01_08280 CDS
T04796
Name
(GenBank) RNA recognition domain-containing protein
KO
K12881
THO complex subunit 4
Organism
cfj
Colletotrichum fioriniae
Pathway
cfj03013
Nucleocytoplasmic transport
cfj03015
mRNA surveillance pathway
cfj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CFIO01_08280
09122 Translation
03013 Nucleocytoplasmic transport
CFIO01_08280
03015 mRNA surveillance pathway
CFIO01_08280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfj03019
]
CFIO01_08280
03041 Spliceosome [BR:
cfj03041
]
CFIO01_08280
Messenger RNA biogenesis [BR:
cfj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CFIO01_08280
TREX complex
CFIO01_08280
Spliceosome [BR:
cfj03041
]
Complex C
Other components
EJC/TREX
CFIO01_08280
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CFIO01_08280
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_occluded
RRM_PARP14_3
Motif
Other DBs
NCBI-ProteinID:
EXF80474
UniProt:
A0A010RR57
LinkDB
All DBs
AA seq
263 aa
AA seq
DB search
MSGKLDQSLDEILSTQRRSAGGPGRRSQRRSTGGRPAAAAPVGGVQKTSRPARGAAANKP
NAAKPAQGSGDSKVIVSNLPKDVNEQQIKEYFLTSVGPIKRVDISYGPNSVSRGIANITF
READGASKAFQKLNGLLVDNRPIKIEIVVGASQAANVIPPAKKTLAERTTQPKAQPKSAA
NNKRNNNNNNANTGKGGPAAAGAAGKKPRAKRTGRPAKKTAEELDSEMADYFESGANPNE
NAAAAAPAPAATNGDAAMEDEIM
NT seq
792 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaaagcttgaccagtctctcgacgagattctctcgacccaacgtcgctctgcc
ggcggacccggccgtcgctctcagcgtcgatccaccggtggtcgccctgcggccgctgcc
ccagtcggcggtgttcaaaagacatcgcgacctgcgcgcggcgccgccgccaacaagcct
aacgccgccaagcccgcgcaaggctctggtgacagcaaggtcatcgtgagcaacctgccc
aaggatgtcaacgagcaacagatcaaggagtactttctcacgtcagttggacccatcaag
agagttgacatctcttacggacccaactctgtcagccgtggcattgccaacatcacattc
cgcgaggcggatggcgctagcaaggccttccagaagctgaacggtcttcttgtcgacaat
cgcccgatcaagattgagattgttgttggcgcttctcaggcagccaacgtcatcccccct
gctaaaaagacccttgctgagcgcaccacgcaacccaaggctcagcccaagtctgctgcc
aacaacaagcgcaacaacaacaacaacaacgcgaacaccggtaagggtggtcctgctgct
gctggcgctgctggcaagaagcctcgtgcgaagcgtaccggccgccctgcgaagaagacg
gcagaggagcttgactctgagatggccgattacttcgagtctggtgccaaccccaatgag
aacgcggctgccgccgctcctgcccccgctgccaccaatggtgacgccgctatggaggat
gagatcatgtaa
DBGET
integrated database retrieval system
