Colletotrichum fioriniae: CFIO01_10577
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Entry
CFIO01_10577 CDS
T04796
Name
(GenBank) exosome complex exonuclease RRP4
KO
K03679
exosome complex component RRP4
Organism
cfj
Colletotrichum fioriniae
Pathway
cfj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFIO01_10577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfj03019
]
CFIO01_10577
Messenger RNA biogenesis [BR:
cfj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CFIO01_10577
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CFIO01_10577
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
RRP40_S1
KH_6
ECR1_N_2
Motif
Other DBs
NCBI-ProteinID:
EXF73163
UniProt:
A0A010RLY9
LinkDB
All DBs
AA seq
347 aa
AA seq
DB search
MPITILAPRGTPSHHKPYAAAGIGAADSDSDSDGGADIEGDISMRPAKRSRGDNYEIVTP
GEIITDDPQWMRGHGTYITQNTTDIVSSVAGTVTRTNKLLSVRPLRARYTPEIGDLVVGR
IVEVQAKRWRVDVGSSQLAILQISAINLPGGILRKRTDTDELQIRSFFAEGDLVVAEVQQ
LHQDGAASLHTRSLKYGKLRNGVFVAVTGTGGGGGVVRAKRQQWVMDAARGAAKVHVTLG
VNGFIWISKHVESDAGAESVGLNRMEESVSANVYSSQNDRIDDETMREVARIRSVILALV
ENGLRVDEDMVVRGYKVAVDMGLESIEDDIYLGGERGKRLAEALLRE
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcacaatcctcgccccgcgcggcacgccgtcacatcacaagccatatgccgcc
gcgggaataggtgcagcagactcggattcggattcagatggcggcgccgacattgagggc
gacatctccatgcgccccgcgaaacgctcccgcggcgacaactacgagatcgtcaccccg
ggtgagatcatcactgacgacccccagtggatgagaggccacggaacctacatcactcaa
aacacaacagacatcgtctcctccgtcgcaggcaccgtaacccgcacaaacaagctcctc
tccgtccgccccctccgcgcccgctacacccccgagataggcgacctcgtcgtcggccgc
atcgtagaggtccaagccaaacgctggcgcgtcgacgtcggctcctcccagctcgccatt
ctccaaatctcggcaatcaacctccccggcggcatcctccgcaagcgcaccgacacggac
gagctccagatccgctccttcttcgccgagggagacctcgtcgtcgcagaggtccagcag
ctccaccaggacggcgccgcctccctgcacacgcgctctttgaagtacggcaagctgcgc
aacggcgtcttcgtggccgttactggcacgggaggcggcggcggcgtggtgagggcaaag
aggcagcagtgggtcatggacgcggcgcgcggcgcagcaaaagtgcacgtcacgctcggc
gtcaacggcttcatctggatcagcaagcacgtcgagagcgacgcgggcgccgagagcgtg
gggctgaaccgcatggaggagagcgtcagcgcaaacgtctactcgagccaaaacgacagg
atcgacgacgagacgatgcgtgaggtcgcgcggatacggagcgtcatcctggcgctggtg
gagaacgggctgcgcgtagacgaggacatggtcgtcagggggtacaaggtggccgtggac
atgggcctggagagcatcgaggacgatatttacctcgggggcgagcggggaaagaggctt
gctgaggctctgctaagagaatag
DBGET
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