Colletotrichum fioriniae: CFIO01_11396
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Entry
CFIO01_11396 CDS
T04796
Name
(GenBank) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
cfj
Colletotrichum fioriniae
Pathway
cfj03020
RNA polymerase
cfj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFIO01_11396
09124 Replication and repair
03420 Nucleotide excision repair
CFIO01_11396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfj03021
]
CFIO01_11396
03400 DNA repair and recombination proteins [BR:
cfj03400
]
CFIO01_11396
Enzymes [BR:
cfj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFIO01_11396
Transcription machinery [BR:
cfj03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CFIO01_11396
DNA repair and recombination proteins [BR:
cfj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CFIO01_11396
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_5
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
Motif
Other DBs
NCBI-ProteinID:
EXF73308
UniProt:
A0A010RMF5
LinkDB
All DBs
AA seq
1258 aa
AA seq
DB search
MADYDDYDYDGYVEEDDTSITPEDCWTVISSFFESKGLVSQQVDSFDEFTSSTVQELIDE
YSQITLDQPNPMSDSDKVIALRRYEVKFGTVMVSRPSITEADGKVTTLLPYECRDRNLTY
ASPLYVKITKKVSIAVEKPVPLNELDEEQQDELANTGEHPTKLEWEEEESGEDYGADKNK
SDDMKDMIFIGRMPIMVKSKICHLSSEQEDDLFMLNECPYDQGGYFIINGSEKVLIAQER
SAANIVQVFKKAQPSPYSYTAEIRSALEKGSRLISSMMLKLYSKGDAAKGGYGQTIHCSL
PYVKADLPIAIVFRALGVVSDEDILNHICYDRNDSQMLEMLRPCIEEAFCIQDREVALDF
IGKRGSNHNIPREKRVRTAKDILQKETLPHISQSEGSETRKAFFLGYMVHKLLQCALGRR
DTDDRDHFGKKRLDLAGPLLAKLFRNIVRRMNQELSGHLKRCVESNRQFSLTLGVKPQTL
SNGLKYSLATGNWGDQKKAASSTAGVSQVLNRYTFASTLSHLRRTNTPIGRDGKLAKPRQ
LHNTHWGLVCPAETPEGQACGLVKNLSLMCYVSVGTPAEPIIDYMIQRGMEVLEEYEPLR
YPNATKVFLNGVWVGVHQDPRILVPDVQGTRRRNVISHEVSLVRDIRDREFKIFSDAGRV
MRPVFVVEQGTNGIVAQGSLVLQKATVNEMREQQENPPDNPADKITWESLAHSGVIEYLD
AEEEETAMICMTPEDLEIYRLQKQGQVVEDNTDGPNSRLKTKINPTTHMYTHCEIHPSML
LGICASIIPFPDHNQSPRNTYQSAMGKQAMGFFLTNYSRRMDTMANILYYPQKPLATTRS
MEFLKFRELPAGQNAVVAIACYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYTDCEKRVGI
NLVEQFEKPFRSDTLRLKHGTYDKLDDDGIVAPGVRVSGEDIIIGKTSPISPDNAEMGQR
TAQHVKRDASTPLRSTENGIVDQVIVTTNQDGLRYVKVRVRTTKIPQIGDKFASRHGQKG
TIGVTYRQEDMPFTGEGITPDIIINPHAIPSRMTIAHLIECLLSKVSTLKGMEGDATPFT
DVTVDSVSQLLRDQGYQSRGFEIMYNGHTGRKLRAQVFFGPTYYQRLRHMVDDKIHARAR
GPVQIMTRQPVEGRARDGGLRFGEMERDCMIAHGAASFLKERLFEVSDAFRVHVCEICGL
MTPIANLSKQSFECRPCKNKTKIAQIHIPYAAKLLFQELQSMNIAARMFTNRSGVSIR
NT seq
3777 nt
NT seq
+upstream
nt +downstream
nt
atggccgactacgatgactacgactacgacgggtacgtcgaagaagacgacaccagcatc
acgcccgaggattgctggactgtaatctcttccttcttcgagtccaagggcttggtttct
cagcaggtcgactccttcgacgaatttacctcttcaaccgtccaggagctcatcgacgag
tactcccaaatcaccctagaccagccgaatcctatgtcagacagcgacaaggtcatcgcc
ctccgtcgatacgaagtcaaatttggcactgttatggtctctcgtccatccatcactgaa
gctgatggtaaagttacgacattacttccctacgaatgccgcgaccgcaacctcacttac
gccagtcccctctatgttaagatcaccaagaaggtctcgattgcggtagagaaaccggtt
ccgttgaacgagctcgatgaggaacagcaagacgaacttgcaaataccggcgagcacccc
actaagttggagtgggaagaggaggaaagcggcgaggattatggcgccgacaagaacaag
tcagacgacatgaaggacatgattttcatcggtcgcatgcccattatggtcaagtctaag
atttgtcacttgagtagcgagcaggaggatgacttgttcatgctgaacgagtgtccttac
gaccaaggaggctatttcatcatcaacggcagcgaaaaggtcctcattgctcaagagcga
tcggctgccaacatcgtccaagtcttcaaaaaggcccagccgagtccatactcttacaca
gctgaaatccgcagcgctctcgagaagggctctcgactcatttcttctatgatgttgaag
ctgtacagcaagggcgacgcggcaaagggcgggtacggccagactatccactgcagtctg
ccctatgtcaaggctgatctgccaatcgctatcgttttccgagctctgggcgtggtttcc
gacgaagatatcctcaatcatatttgctatgaccgaaatgatagccagatgctcgaaatg
ttgcggccatgcatcgaggaagctttctgtattcaggacagagaggttgcccttgacttt
atcggcaagcgtggcagcaaccacaatattcccagagaaaagcgtgtgagaactgccaaa
gatattcttcaaaaagagactctgccgcatatctcccagagcgaaggcagtgagacacgg
aaggcattcttcttgggatacatggttcacaagctgctccaatgcgccttagggcgacgc
gataccgacgatcgtgatcactttggcaaaaagcgccttgatcttgccggtccccttctc
gccaagctgttccgcaacatcgtccgccgcatgaaccaggagttatctggccatctcaag
cgctgtgtcgagtctaaccggcaattcagtctcactctaggtgtgaagccgcagaccctt
tccaatggattgaagtactctttggcgactggcaactggggagatcagaagaaggctgcg
agctcgacggctggtgtgtctcaggtgctaaaccgctacacttttgcgtctacgttatcc
catcttcgtcgcacaaatacgcccattggtcgtgacggcaagctggcaaagccccgacaa
cttcacaacacgcactggggtttggtttgcccggctgagacgccggagggtcaagcttgt
ggtctcgtcaagaacctgtccctcatgtgctatgtcagtgtcggtacgcctgctgagccc
attatcgattacatgatccagcgaggcatggaagtgctcgaggagtacgagccactgagg
taccccaacgccaccaaggtcttcctgaatggagtctgggttggtgtgcaccaagaccca
agaattttggttcctgacgttcagggcacccgtcgacgaaacgttatttctcacgaagtg
tcgcttgtccgggatatccgagaccgcgagttcaagatcttttccgacgccgggagagtc
atgagacctgtgttcgtcgtagagcaaggtaccaacggcatagtagctcagggatcgctc
gtgctgcaaaaggcaacggtcaacgaaatgcgcgagcagcaggagaaccctccagacaac
ccggctgacaaaatcacttgggagtctcttgcccacagcggagttatagaatatctcgat
gctgaggaagaagagacagccatgatttgcatgacgcccgaggatctggaaatctacaga
ttgcagaagcaaggtcaagtggtcgaggacaacaccgatggccccaatagccgtctgaag
actaagatcaatcccacaacacacatgtacactcattgcgaaatccaccccagcatgctc
ctgggaatctgtgccagcatcattcctttccccgatcataaccagtcgcctcgtaatacc
taccagtccgctatgggcaagcaagccatgggcttcttcttgacgaactactcacgcaga
atggacacgatggccaatattctatactaccctcaaaaaccacttgctaccacgcggtcc
atggaattcctcaagttcagagagcttccagccggacagaacgctgtcgtcgctattgcc
tgttactctggttacaaccaggaagattccgtgatcatgaatcagagcagcatcgatcgt
ggactcttcagaagtctgttcttcagatcgtacactgactgcgagaaacgcgtgggtatc
aatctcgttgagcagttcgagaagcctttcagaagcgataccttacgcttgaagcatggc
acctacgacaagcttgatgatgatggcattgtagcaccgggagttcgtgtctcgggtgaa
gatatcattatcggaaagacgtcgcctataagcccggacaacgccgagatgggccagcga
acggcgcagcatgtcaagcgcgacgcctccacgccactcagaagtaccgaaaatggtatt
gtagaccaggtcatcgtgacgaccaaccaagacggcctccgttacgtcaaggtccgtgtc
agaacaaccaagattccacagattggtgataagtttgcctcacgtcacggccagaagggt
accattggtgttacttatcggcaagaagatatgccctttaccggcgagggcatcacgccg
gacatcatcatcaatcctcacgcaattccatctcgtatgaccattgctcacttgatcgag
tgtctacttagcaaagtctcgacattgaagggaatggagggtgatgctacccctttcaca
gatgtgactgttgactcagtctcgcagctcctccgagatcaaggatatcaatcgagaggt
ttcgagatcatgtacaatggccacactggcaggaagctacgagcccaagtcttctttgga
ccgacttactaccagcgtctgcgccacatggtggacgacaagattcacgctcgtgcgcgt
ggacctgttcagatcatgaccagacaacctgtggagggtcgtgctcgtgatggaggtctt
cgtttcggagagatggagcgtgattgcatgattgctcatggcgctgcatcttttctcaag
gagagacttttcgaggtgtcggatgctttccgagttcacgtttgcgaaatttgcggcctg
atgacgcctatcgcaaacctctcgaagcaatcgttcgagtgtcggccgtgcaaaaacaag
acgaagattgcacaaatccacattccttacgcagctaagcttctgttccaggagctgcag
tcgatgaacatcgccgcccgcatgtttaccaacaggtctggggtctccatccgataa
DBGET
integrated database retrieval system
