Colletotrichum fioriniae: CFIO01_11474
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Entry
CFIO01_11474 CDS
T04796
Name
(GenBank) ATP-dependent RNA helicase SUB2
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cfj
Colletotrichum fioriniae
Pathway
cfj03013
Nucleocytoplasmic transport
cfj03015
mRNA surveillance pathway
cfj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CFIO01_11474
09122 Translation
03013 Nucleocytoplasmic transport
CFIO01_11474
03015 mRNA surveillance pathway
CFIO01_11474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfj03019
]
CFIO01_11474
03041 Spliceosome [BR:
cfj03041
]
CFIO01_11474
Enzymes [BR:
cfj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFIO01_11474
Messenger RNA biogenesis [BR:
cfj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
CFIO01_11474
Spliceosome [BR:
cfj03041
]
Complex C
Other components
EJC/TREX
CFIO01_11474
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
CFIO01_11474
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
CMS1
Motif
Other DBs
NCBI-ProteinID:
EXF81976
UniProt:
A0A010RNH9
LinkDB
All DBs
AA seq
433 aa
AA seq
DB search
MSAEEDLIDYSDEELQTNETAAASNGKKADAAAGNAVDKKGSYVGIHSTGFRDFLLKPEL
LRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLTTLQQVEPVQGEVSV
LVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDVETIKNKETCPHVIVGTPG
RLNALVRDKVLRLGSVRIFVLDECDKMLDQIDMRRDVQEIFRATPTQKQVMMFSATLSDD
IKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEREKNRKLNELLDDLQFNQVIIFV
KSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIE
RINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKAIEKRFEVALPEF
PKEGIDASTYMAS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgaggaggatctcatcgactactccgacgaggagctccagaccaacgagact
gcggccgcctccaacggaaagaaggctgacgctgccgccggtaacgccgtcgacaagaag
ggcagctatgtcggcattcactcgaccggtttccgcgacttcctcttgaagcccgagctt
ctccgcgcgattggcgattgcggtttcgagcatccttcggaggtccagcaaacctgtatc
cctcaggctctcctcggtggagatatcatctgccaggccaagtctggtctcggaaagacg
gccgtcttcgtcctgacgaccctgcaacaagttgagcccgtccagggtgaggtttccgtg
ttggttatgtgccacactcgtgagctcgccttccagattcgcaacgagtacaaccgtttc
agcaagtacatgcccgatatcaagactggtgtcttctacggcggcactcccatccagaag
gatgtcgagacgatcaagaacaaggagacctgcccccatgtcattgtgggaacccctggc
cgacttaacgcgttggtccgcgacaaggttctccgcctcggtagcgtccgtattttcgtc
ctcgacgagtgcgacaagatgctcgaccagatcgacatgcgccgtgacgtccaggagatc
ttccgcgccacccccactcagaagcaggttatgatgttctcggccaccctgtccgatgac
atcaagcccatctgcagaaagttcatgcagaaccctaccgagcactacgtcgacgaggac
accaagctcaccctgcacggtcttcagcaatactatatcaagctcgaggagcgcgagaag
aaccgcaagctcaacgagctcctggacgaccttcagttcaaccaggtcatcatctttgtc
aagagcacgctgcgtgcgaccgagttggacaagttgctgagagagtgcaacttcccctcc
atcgccgtccactccggcgtcagccaggaggagcgtatccgccgttacaaggagttcaag
gagtttaacaagcgtatttgcgttgctaccgacgtcttcggcagaggtattgatatcgag
cgtatcaacctggccatcaactacgacctgcctgccgatgccgactcgtacctgcacaga
gtcggtcgtgccggtcgtttcggtaccaagggtcttgccatctcctttgtgagcactgac
caggaccaggaggttctcaaggctattgagaagcgcttcgaggttgctcttcctgagttc
cccaaggagggtatcgatgccagcacctacatggcctcttaa
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