Colletotrichum fioriniae: CFIO01_12166 Help Entry CFIO01_12166      CDS       T04796                                  Name (GenBank) DSHCT domain-containing protein   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism cfj  Colletotrichum fioriniae Pathway cfj03018   RNA degradation Brite KEGG Orthology (KO) [BR:cfj00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     CFIO01_12166  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:cfj03019]     CFIO01_12166 Enzymes [BR:cfj01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      CFIO01_12166 Messenger RNA biogenesis [BR:cfj03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      CFIO01_12166   mRNA degradation factors    3'-5' decay     Ski complex      CFIO01_12166 SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Transket_pyr Transketolase_C Ski2_N DEAD MTR4_beta-barrel MTR4-like_stalk ResIII DEXQc_Suv3 Helicase_C Ski2_beta-barrel Motif Other DBs NCBI-ProteinID:  EXF77550 UniProt:  A0A010QLH4 LinkDB All DBs AA seq 1709 aa AA seqDB search MSRFLRPAARLASSARAASLRTSPISQFVSRPAAFAIQSRTYADAKGTKDYTVREALNEA LAEELEANDKVFVLGEEVAQYNGAYKVTKGLLDRFGDKRVIDTPITESGFCGLAVGAALS GLHPVCEFMTFNFAMQAIDQIVNSAAKTLYMSGGIQPCNITFRGPNGFASGVAAQHSQDY SAWYGSIPGLKVVSPWSAEDAKGLLKAAIRDPNPVVVLENELMYGQTFPMSEAAQKDDFV IPFGKAKIERSGKDLTIVTLSRCVGQALVAAENLKKNYGVDVEVINLRSVKPLDVETIVQ SVKKTHRLLSVESGFPAYGVGSEILAVTMEYAFDYLDAPAQRVTGADVPTPYAAGLEEMA FPTEQIIENYVAKMLRLNEHLANTKYIIAMAEAADVSVVNDKVGSEPISSPRLGSSFRRL YTFLPLIVVEMASDLATAIQGLHLEDLPDSNIDDILFEQRPSKRVKQDVSELKTSLETDF LMPCMKFSPEWLNGLQQRWDCHVDYTELFKIGNPQTRTVTRFERHGLEGRVSGYRNVTVP ANSATAKNSTSFLRKPANRADFVRGAAGFFPFAPGGLDGIEATAAFEDQVHRPGGGEATA VSNNKLERVIKLGIEGGLLEVAPGLSRGFNVGQKKADEDEARAIEQELGQEPEQPPGADE ADGEAQTNGDKLNGVESEDEEDSEDIDAILPVEFPALEPHGALASSSARKAGREWAHMVD INRDITNFRELVPDMARDWPFELDTFQKEAIYHLESGDSVFVAAHTSAGKTVVAEYAIAL ATKHMTKAIYTSPIKALSNQKFRDFRQTFDEVGILTGDVQINPEASCLIMTTEILRSMLY RGADLIRDVEFVIFDEVHYVNDFERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVG RTKQKDIYVISTPKRPIPLEHYLWAGKNIHKIVDSDKKFIEKGWKEANSAIQGKEKTKAP EPINAPRGGGGQRGGQRGGPQRGGQRGGQRGGGPQQRGRGGAPRASHNPGHMGRTGRQGG FTSAAQDKNLWVHLVQFLKKSNLLPSCIFVFSKKRCEENADALSNQDFCTATEKSAIHMT IEKSIARLKPEDRALPQIIRLRELLSRGIAVHHGGLLPIVKEIVEILFAQTLVKVLFATE TFAMGLNLPTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDTVGSVIIVPPGGD EAPPVADLQKMILGEPSKLRSQFRLTYNMILNLLRVEALKIEEMIKRSFSEHATQQLLPE HEKAVKISEADLAKIKRDSCSVCDVSMDECHQASEDYKQLTGEVYKSLMGIPIGRKMFNQ ARLIVYNRDGIRTPGILLSDGASDKGQGGPTLHVCEIRLMRETRDSTDLLPFIPAFRKYL TPLPQAKKHMRIKTLQVPLSDVECLTRYVTKGIVPEIFQGGEKYAKAKDRLHALCRSWDD LWDEMDLSKIKNLSFQEVMKKRKDAEGVASSSSALSCSQFLKHFAMCHDQWLIKEHISQL RQSLSDQNLQLLPDYEQRIQVLKQLQFIDESARILLKGKVACEIHSGDELVLTELILDNV LADYEPAEIAALLSAFVFQEKTDTQPNLTGNLERGKDTIIAISEKVNEVQTLHQVIQSAD DSNDFISRPRFGLMEVVYEWARGMSFKNITDLTDVLEGTIVRTITRLDETCREVKNAARI IGDPELYQKMQTAQEMIKRDITAVASLYM NT seq 5130 nt NT seq  +upstreamnt  +downstreamnt atgtcccgcttcctccgtcccgcagctcgcctggcatcctctgccagagctgcctcgctc cgcacctcccctatctcccaattcgttagccggcccgctgctttcgccatccagtcacgg acatatgccgacgcaaagggaaccaaggactacactgtccgagaggccctcaatgaggcc ctcgccgaggagcttgaagccaatgacaaggtcttcgttctgggtgaggaggtcgctcag tacaacggcgcatacaaggtcacaaagggtctcctggaccggttcggcgacaagcgtgtc atcgatacacccatcaccgagagcggtttctgtggtctcgctgttggcgctgcccttagc ggactgcaccctgtgtgcgagttcatgaccttcaacttcgccatgcaagccatcgatcag atcgtcaactccgccgccaagaccctctacatgtccggtggcatccagccctgcaacatc accttccgcggtcccaatggcttcgcctctggtgtcgctgcgcagcactctcaggactac tcagcctggtacggcagcatccctggtctgaaggtcgtctccccttggagtgccgaggac gctaagggtctgctcaaggctgccattcgcgatcccaaccccgttgtcgttctcgagaac gagctcatgtacggccagaccttccccatgtcggaggctgcccagaaggatgacttcgtc attccctttggcaaggccaagatcgagcgctccggcaaggacttgaccattgtcacgctc tcccgatgcgtcggccaggctctggttgctgctgagaacttgaagaagaactacggcgtc gatgtcgaggttatcaacctgcgctccgtcaagcccttggacgtcgagaccattgttcag tctgtcaagaagacccaccgcctgctttccgttgagtctggattccccgcctacggtgtt ggctcagaaatcctggctgtgacaatggagtacgcctttgactaccttgatgcgcctgcc cagagagtcactggtgccgacgtccctaccccttacgcggccggtcttgaagagatggct ttccctactgagcagatcattgagaactacgtcgccaagatgctgcgtcttaatgagcat ttggctaatacgaagtacattattgccatggctgaggcggccgatgtatctgtcgtcaat gacaaggtaggctcagagccaatctcatcgcctcgtctcggctcatccttccgacgactt tacacattcctgccgttgattgtcgtcgagatggcttctgacctggccacggccattcaa ggtcttcatcttgaggatcttcccgactccaacattgatgacatcttgtttgagcaacgg cccagcaagcgtgtcaagcaagatgtttcggagctgaagacaagtctggagactgacttt ctcatgccatgcatgaagttctcacctgaatggctcaatggcctgcagcagcgctgggat tgccacgtggattatacggaactcttcaagattggcaatccccaaaccagaactgtgact cgttttgaacggcacggtctcgaaggcagagtgagtggctaccgaaacgttaccgtgcct gccaacagtgctaccgccaagaattcgacctcatttcttcgtaagcccgccaacagggct gatttcgtccgtggagctgccggatttttccccttcgcacctggaggtcttgatggaatc gaggcaaccgccgctttcgaggaccaggttcaccggcctgggggcggtgaggctacagct gtatcaaacaacaagctggagcgggtcatcaagcttggtatcgagggcgggctgcttgag gttgcgcctggactgagtcgagggttcaacgttggtcagaagaaggcagatgaggacgaa gccagggcgattgagcaagaactgggccaagaaccagaacaacccccaggtgctgacgaa gcagacggcgaagcgcagacaaatggcgacaagctgaatggggttgagtccgaagatgaa gaagatagcgaggatattgacgctatccttcctgtcgagttccccgctctcgaacctcat ggtgccttggcttcatcgagtgcaaggaaggctggccgagagtgggctcacatggttgat attaacagggacatcaccaacttcagagaattggtgcctgatatggcaagggattggccc tttgagctcgacactttccagaaggaggccatttatcatctcgagagtggtgattctgtc ttcgtcgccgcacacacatcagccggtaaaaccgtcgttgctgaatacgccattgctctc gcaacgaagcacatgaccaaggctatatatacgtccccgatcaaggccctgagcaaccag aagttccgagatttccgtcaaacgtttgacgaggtcggtatcctgacgggtgacgttcaa attaacccggaagccagttgcctgattatgacaacggagattctgagaagcatgctctac cgtggagccgatctcatccgagacgtcgagttcgtcatttttgacgaggtacactacgtc aacgattttgagcgcggcgtcgtttgggaagaagtcatcatcatgcttcccgaacacgtc acactcattctcctctcagcaacagttcccaatacctatgagtttgcctcctgggttgga cgcaccaagcaaaaggatatctacgtcatctcaacaccaaagcgccctatcccattggaa cactacttgtgggctggcaagaatatccacaaaatcgtcgactccgacaagaaattcatc gagaagggttggaaggaggccaattcggcgattcagggcaaagagaagaccaaggctccc gagccaattaacgcgcctcgcggtggtggtggtcagagaggaggccagagaggaggaccc cagcgcggcggacagcgagggggtcagcgtggcggcggtcctcaacaaaggggccgtggt ggagcgccgcgcgccagtcacaacccgggtcacatgggacggacaggtcgccagggtggt tttacctctgcagcccaagacaagaacctttgggttcatctagttcagttcctcaagaag tcgaaccttctgccttcttgcatctttgtcttctcgaagaagcgatgcgaggagaatgcc gatgcactcagtaatcaggacttctgcacagcgaccgagaagagtgccatccacatgact atcgagaagtccatcgccaggcttaagcccgaggatcgggctctgccacagattatcaga ctccgtgagcttctgtcccgaggtattgcggttcatcatggagggctgttgccaatcgtc aaagagattgtcgagatactcttcgcccagacacttgtcaaggtactttttgccacggag acctttgccatgggtctcaatttgccgactagaacagttgttttctccggataccgtaaa cacgacggccattccttcagaaacctgcttcctggcgagtatacacaaatggccggccga gcaggtcgtcgtggcttggacacagtcggctcggtcattatcgttccgccgggcggggac gaagctcctcccgttgccgaccttcagaagatgattctaggagaaccgtcgaagctcaga tcccaattccgtctcacttacaacatgatcctcaatttactccgagttgaggctctcaag attgaagagatgatcaagcgtagcttctcggaacatgccactcagcagctgctccctgag catgaaaaagcagttaagatctcggaggccgacttagccaagatcaaacgagactcatgt agcgtctgcgacgtgtctatggacgagtgtcatcaagcgtcagaggactacaagcaactt actggggaagtttacaagtctctcatgggtattcccattggtcgcaaaatgttcaatcag gcccgcttgattgtctacaaccgagacggtattcgcacacctggtatcttgctgtcggat ggcgcgagtgacaaggggcaaggtggacctactctacatgtttgtgagatcaggctcatg agggaaactcgtgattcgacagaccttctgccgttcatcccggccttccgcaagtacttg acaccgctaccgcaggcgaagaagcacatgcggattaagaccctgcaggtccctctgagt gatgttgaatgtttgacgaggtacgtcaccaagggcattgtgccagagattttccaaggc ggggagaagtacgcaaaagcgaaggacaggctccatgcactgtgccggtcgtgggatgat ctttgggacgagatggatctctccaagataaagaacctctcatttcaagaggtaatgaag aagagaaaggatgcggaaggcgttgcctcgtcctcgtctgctctttcttgttctcaattc ttgaagcatttcgccatgtgccatgatcagtggcttatcaaggagcacatctcccagctc cggcaatctctctcagaccagaaccttcaacttctgccggactacgaacaacgcattcaa gtgcttaaacagctccaattcattgacgaaagcgccagaatattgctgaaaggtaaggtg gcctgcgagattcactcgggcgatgaactcgttttgacagagttgattttggacaacgtg ctcgccgattacgagccagccgaaattgctgctttgctttcggccttcgtctttcaggaa aagacggacacacaaccaaacctaacgggcaaccttgagcgtggcaaagataccatcatt gctatcagcgagaaggtcaacgaagtccagacgctgcaccaagtcatacagtctgcggac gattcgaatgactttatatctcggcctcgcttcggtctgatggaagttgtttacgaatgg gcgcgaggcatgagcttcaagaacattactgatctgaccgatgtcctggaaggaactatt gtgcggaccatcacacgtctggacgagacatgtcgtgaggtaaagaacgcggctcgcatc attggagacccagaattgtatcagaagatgcagacagcgcaagagatgatcaagcgggat atcacggccgttgccagtctgtatatgtag

DBGET integrated database retrieval system