Colletotrichum fioriniae: CFIO01_12553
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Entry
CFIO01_12553 CDS
T04796
Name
(GenBank) exosome component EXOSC1/CSL4
KO
K07573
exosome complex component CSL4
Organism
cfj
Colletotrichum fioriniae
Pathway
cfj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFIO01_12553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfj03019
]
CFIO01_12553
Messenger RNA biogenesis [BR:
cfj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CFIO01_12553
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CFIO01_12553
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
MotA_activ
Motif
Other DBs
NCBI-ProteinID:
EXF78375
UniProt:
A0A010QNV6
LinkDB
All DBs
AA seq
211 aa
AA seq
DB search
MATVETPQTAVPGKVLGPTTRFAAGPGTHVYDGNVVASLLGDVTVTASVKAQAGLTKRLN
RITPLSPEELATISVARKGASKKREVLPDVGNMVLCRVVRLMPKQAIVTIQQVGDTVLQT
EWQGVIRSQDVRATEKDKVKIYESFKPGDVVRAQVISLGDQANYYLSTAANELGVIMATS
EAGNDMVPVSWKEYKDPETGIGEPRKVAKPN
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atggccacggttgagactccccagaccgctgtgccgggcaaggtcctcggccctactacg
cggtttgccgccggcccaggaacacacgtctacgacggaaatgtcgtcgcctccctgctc
ggcgacgtgaccgtcacagcatcggtcaaggcccaggccggcctcacgaagcgcctcaac
cgcatcacgccgctgtcccccgaggagctggcgaccatctccgtggcgcgcaagggcgct
agcaagaagcgcgaggtgcttcccgacgtgggcaacatggtgctctgccgcgtcgtgcgg
ttgatgccgaaacaggccattgtcacgatccagcaggttggcgacacggtgctgcagacg
gagtggcagggtgtcattcgctctcaagacgtgagggcgacggagaaggataaggtcaaa
atctatgagagcttcaagcccggtgacgtggtgcgggcgcaggtgatttctctgggagac
caggcaaactactacctctccaccgctgccaatgagctgggtgttatcatggccaccagc
gaggctggcaacgacatggtgccggtcagctggaaggagtacaaggacccggagactggc
attggagagccacgcaaggtggccaagccaaactga
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