Colletotrichum fioriniae: CFIO01_13445
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Entry
CFIO01_13445 CDS
T04796
Name
(GenBank) exosome complex exonuclease RRP43
KO
K12586
exosome complex component RRP43
Organism
cfj
Colletotrichum fioriniae
Pathway
cfj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFIO01_13445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfj03019
]
CFIO01_13445
Messenger RNA biogenesis [BR:
cfj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CFIO01_13445
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
EXF84491
UniProt:
A0A010RVA5
LinkDB
All DBs
AA seq
347 aa
AA seq
DB search
MAASKGLPRDTFAKLSPHPFLLANLQPPAPANAARSNGRAPNEARIPNVNTSSLTHAHGS
AVVRTGDTTVICGVRAETLLASDIPNFRTAANLDDDNGKPSSELKDYDLLVPNIELATGC
APQFLPGVPPTTLAQTLSTRVYSLLHSSNLVDPEDLRIWYTRPTEKAETEGDDGDDKMDE
DEDEDEEKPEGEKVVMAYWVLYIDIFFISFDGNPFDIAWAAILAALRDTTIPVARWDADR
EMVVCSRESPKPLTLHGFPIACTAGVFTGKETTDRPAAGKFWTLVDPDRLEESLCDEEVT
AVVDRSEGETKVLAISKHGGTVLQPQLIREFVGVAERRWEQFYKAMA
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atggctgcctccaagggcctccctcgcgacacgttcgccaagctctctcctcaccccttc
ctcctcgcaaacctccagcctcccgcacccgccaatgctgccagaagcaacggccgcgca
cccaacgaagcccgaattcccaatgtcaacacttccagcttgacccatgcccatggaagc
gctgttgtccgcacgggcgatacaaccgtcatttgcggtgttcgcgccgagacacttctc
gcctccgacatccccaacttccgcaccgctgcgaatctcgatgatgacaacggcaagccc
agctcggagctgaaggactacgacttgcttgttcccaacatcgagctcgccactggctgc
gcaccgcagtttctccccggcgtacccccaaccacactagcgcaaaccctgagcacgaga
gtttactcactgctgcattcctctaacctcgtcgacccggaggacctgagaatctggtac
acccgccctaccgagaaggccgagacggagggcgatgatggagatgacaagatggacgag
gacgaggacgaggacgaagagaagcccgagggtgaaaaggttgtcatggcgtactgggtt
ctgtacattgacattttctttatctctttcgacggcaacccctttgacattgcctgggct
gctatcctagccgcccttcgcgacacaacgatccccgtcgcacgatgggacgcagaccgc
gagatggtcgtctgctcccgagagagccctaagcccctgacattgcacggcttccctatc
gcctgcacagctggcgtcttcacaggaaaggagacgacggatcggcctgccgccggcaag
ttctggactctagtcgacccggacaggttggaggagagtctatgtgatgaagaggtaacg
gcagtggtggaccgaagtgagggagagacgaaggtattggcgatatcaaagcacggagga
acggtgctgcagccgcagctcatacgggagttcgtgggcgttgcggagcggagatgggag
cagttttacaaggccatggcatga
DBGET
integrated database retrieval system
