Corynebacterium frankenforstense: CFRA_03905
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Entry
CFRA_03905 CDS
T04872
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfk
Corynebacterium frankenforstense
Pathway
cfk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFRA_03905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfk03400
]
CFRA_03905
Enzymes [BR:
cfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFRA_03905
DNA repair and recombination proteins [BR:
cfk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFRA_03905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
LSDAT_prok
Motif
Other DBs
NCBI-ProteinID:
APT88563
UniProt:
A0A1L7CRU1
LinkDB
All DBs
Position
882106..885780
Genome browser
AA seq
1224 aa
AA seq
DB search
MLSGLLEVAATDPKMRGLVANVGDPTLHVTGIDQARSWALGALARKTPLLVVTATGREAE
DLTAELRAMLGETVALFPSWETLPHERLSPGADIVGRRAAVLDHLEDAQVVVTPARGFCQ
PVLKTAAGREGLVLAEGEEHDFSALTEQLVFRAYEHVDMVARRGQFAVRGGILDVFPTTA
NYPVRVEFWGDEVSEIRQFSVADQRTIPEIEVGRVEIYPARELLITDGVAARAEKLAVEH
PGNPTLTELLTRVSERTYADGMEAILPALTDTPLVPLTDLLPDGTHVMLVNPEKIRTRIH
DLETTDNEFLAAGWEAAAMGAAGPVAAEGVDTSAASYLDIETLEDAARDRGLPWWTFAPP
GMFVAGEEVTLPLEFEAGPAPRGDLGEIDQMMGRLHEHTRHGGRAAFVTPTRGLVKRMAE
RFSEKGIPNRVAEPGAVPEPGEIVIYQALSHAGLVFPAVADASVGKHTHPLVVVTETDLT
GNRVGDIAGAKRRPARRRNRVDPLALKAGDYVVHETHGIGRFLKMAERTIKAGDETSRRE
YIVLEYAPSKRGQPADQLWVPMDSLDLLSKYSGGEAPTLSKMGGSDWKNTKKKARAAVRE
IAGELIELYAKRQSAPGHAFAADSPWQRELEDNFPFVETEDQMAAIDAVKEDMEKPVPMD
RVIVGDVGYGKTEVAVRAAFKAVQDGRQVAVLVPTTLLAQQHLATFAERMDGFPVTIKGL
SRFTSGREAKEILKGLADGTVDIVVGTHRLLQTGVNWKNLGLVIVDEEQRFGVEHKEHIK
ALRTHVDVLTLSATPIPRTLEMSMSGIREMSTILTPPEDRHPVLTYVGPEEEQQVAAAIR
RELLRDGQVFYIHNRVSDIEKKARQLRELVPEARIVVAHGQMSEEILERTVQGFWDREYD
VLVCTTIVETGLDIQNANTLIVENSHHMGLSQLHQLRGRVGRSRERGYAYFLYPKGTTLT
ETSYDRLSTIAQNNDLGAGMAVAMKDLEMRGAGNVLGSAQSGHIEGVGFDLYMRLVGEAV
ETYRALAEGKTLDATDKGPKEIRVDLPVDAHIPESYINSERLRLEVYRQLAASESDQDLQ
LAVEEMEDRYGPVPEEVARLLSVARLRHQARRAGVTDIAVQGTRIKVHPVELSDSRQVRL
KRLYPGSNYRAAAKAIQLPFPKAGRKLTDPKLRDEDLLQWLADFLSEMFDLEHADVRGGG
AGEDGKGAGEGGKSGRKRVVSVSE
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgctctcggggctgctcgaggtcgccgccacggacccgaagatgcgcgggctcgtcgcc
aacgtcggcgaccccaccctgcacgtcacgggcatcgaccaggcccgcagctgggcactg
ggggcactggcccgcaagaccccgctgctggtggtcaccgccaccggccgcgaggccgag
gacctgaccgccgagctgcgcgccatgctcggcgagacggttgcgctcttccccagctgg
gagaccctgccgcacgagcggctctccccgggcgcggacatcgtcggccgccgcgccgcc
gtcctcgaccacctcgaggacgcgcaggtggtggtcaccccggcgcgcggcttctgccag
ccggtgctcaagaccgccgccggccgcgagggcctggtgctcgccgagggggaggagcac
gacttctccgccctgaccgagcagctggtcttccgcgcctacgagcacgtcgacatggtc
gcccgccgcggccagttcgccgtgcgcggcggcatcctcgacgtcttcccgacgaccgcg
aactaccccgtgcgcgtcgagttctggggcgacgaggtcagcgagatccgccagttctcg
gtggccgaccagcgcaccatccccgagatcgaggtcggtcgcgtcgagatctacccggcc
cgcgagctgctgatcaccgacggggtcgccgcccgcgccgagaagctcgccgtcgagcac
cccggcaaccccacgctgaccgagctgctcacccgcgtctccgagcgcacctacgccgac
ggcatggaggcgatcctgccggcgctgacggacaccccgctggtgccgctgaccgacctg
ctgcccgatggcacccacgtgatgctggtcaacccggagaagatccgcacccgcatccac
gacctggagaccaccgacaacgagttcctcgccgccggctgggaggccgccgccatgggc
gcggccggccccgtggccgccgagggcgtggacacctccgcggcgtcctacctggacatc
gagaccctcgaggacgccgcccgcgaccgcggcctgccgtggtggaccttcgccccgccc
ggcatgttcgtcgccggcgaggaggtcaccctgcccctcgaattcgaggccggccccgcc
ccgcgcggcgacctcggcgagatcgaccagatgatgggccgcctccacgagcacacccgc
cacggcgggcgcgccgccttcgtcacgcccacccgcgggctggtcaagcgcatggccgag
cggttctcggagaagggcatccccaaccgcgtcgccgagcccggcgcggtacccgagccc
ggcgagatcgtcatctaccaggcactctcgcacgccggactggtcttcccggcggtggcc
gacgcgagcgtcggcaagcacacgcacccgctcgtcgtggtcacggagacggacctgacc
ggcaaccgcgtcggcgacatcgccggcgccaagcgccgcccggcgcgccggcgcaaccgc
gtcgacccgctcgcgctgaaggccggcgactacgtggtgcacgagacgcacggcatcggg
cgcttcctcaagatggccgagcgcaccatcaaggccggcgacgagacctcgcggcgcgag
tacatcgtcctcgagtacgcgccgtccaagcgcgggcagcccgccgaccagctgtgggtg
cccatggactcgctcgacctgctgagcaagtactccggcggcgaggcgcccaccctgtcg
aagatgggcggctcggactggaagaacaccaagaagaaggcgcgcgccgccgtgcgcgag
atcgccggcgagctcatcgagctctacgccaagcggcagagcgcgccgggccacgccttc
gccgccgacagcccctggcagcgcgagctggaggacaacttcccgttcgtcgagaccgag
gaccagatggcggccatcgacgcggtcaaggaggacatggagaagccggtgccgatggac
cgcgtcatcgtcggcgacgtcggctacggcaagaccgaggtcgccgtgcgcgcggccttc
aaggccgtccaggacggccgccaggtcgccgtgctcgtgccgaccacgctgctggcacag
cagcacctggccaccttcgccgagcgcatggacggcttcccggtgaccatcaaggggctg
tcgcgcttcacctccggcagggaggccaaggagatcctcaaggggcttgccgacggcacg
gtggacatcgtggtgggtacccaccggttgctgcagaccggcgtgaactggaagaacctg
gggctggtcatcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcacatcaag
gcgctgcgcacccacgtcgacgtgctgaccctgtcggccaccccgatcccgcgcaccctg
gagatgtcgatgtccggcatccgcgagatgtccaccattctcaccccgcccgaggaccgc
cacccggtgctgacctacgtcggccccgaggaggaacagcaggtcgccgccgccatccgg
cgcgagctgctgcgcgacgggcaggtcttctacatccacaaccgggtctccgacatcgag
aagaaggcccgccagctgcgcgagctggtgcccgaggcgcgcatcgtcgtcgcccacggg
cagatgagcgaggagatcctcgagcgcaccgtgcagggcttctgggaccgcgagtacgac
gtcctggtgtgcaccaccatcgtggagaccggcctggacatccagaacgccaacaccctg
atcgtggagaactcccaccacatggggctcagccagctgcaccagctgcgcgggcgcgtc
gggcgctcccgcgagcgcggctacgcctacttcctctacccgaagggcaccacgctcacc
gagacctcgtacgaccggctctccacgatcgcgcagaacaacgacctcggcgcgggcatg
gccgtggccatgaaggacctcgagatgcgcggcgccggcaacgtgctcggctccgcgcag
tccggccacatcgagggcgtcggcttcgacctgtacatgcgcctggtcggcgaggccgtg
gagacctaccgcgccctggccgagggcaagaccctcgacgccaccgacaagggcccgaag
gagatccgcgtcgacctgcccgtcgacgcccacatcccggagagctacatcaactccgag
cggttgcgcctcgaggtctaccgccagctggccgcctccgagtccgatcaggacctgcag
ctggccgtcgaggagatggaggaccgctacgggcccgtgcccgaggaggtcgcccgcctg
ctctccgtggcccggctgcgccaccaggcccgcagggccggggtgaccgacatcgcggtg
cagggcacgcgcatcaaggtccaccccgtcgagctcagcgactcgcgccaggtgcgcctc
aagcggctctacccgggctcgaactaccgggccgccgccaaggcgatccagctgcccttc
ccgaaggccgggcgcaagctgaccgacccgaagctgcgcgacgaggacctgctgcagtgg
ttggccgacttcctcagcgagatgttcgacctcgagcacgccgacgtccgcggcggcggt
gccggtgaggacggcaagggtgccggtgagggtggcaagtccgggaggaagcgggtcgtc
tccgtcagcgaatga
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