Corynebacterium frankenforstense: CFRA_04640
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Entry
CFRA_04640 CDS
T04872
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cfk
Corynebacterium frankenforstense
Pathway
cfk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFRA_04640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfk03019
]
CFRA_04640
03009 Ribosome biogenesis [BR:
cfk03009
]
CFRA_04640
Enzymes [BR:
cfk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CFRA_04640
Messenger RNA biogenesis [BR:
cfk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CFRA_04640
Ribosome biogenesis [BR:
cfk03009
]
Prokaryotic type
rRNA helicases
CFRA_04640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrA_inter
adh_short
AAA_22
Motif
Other DBs
NCBI-ProteinID:
APT88660
UniProt:
A0A1L7CS41
LinkDB
All DBs
Position
1046451..1048844
Genome browser
AA seq
797 aa
AA seq
DB search
MSITENAAGGENAPENVDESVNREDSRGVEAQTSENTRAADQAGQTENDDEKKDSAAEGG
AEAAADAHVAEGTASESDGAEDMDDKERVEQGAENENDDAKGAENKDDAAQDAGADGKTE
ENTDDKSGTSGADEKSEKDDENDKNDDAPGFDALSLPDDVVEAVRKVGFEQPSAIQQETI
PLLMQGRDVVGLAQTGTGKTAAFALPILARIDRSQRHPQALVLAPTRELALQVADSFQQF
ADHLGGIHILPIYGGQAYGIQLGGLRRGAHIIVGTPGRVIDHLERGSLDISNLRFLVLDE
ADEMLNMGFQEDVERILEDTPEHKQVALFSATMPNGIRRISKQYLDNPAEVTVKAETRTA
TNITQRWLHVAHRNKLDALTRILEVTEFEAMIIFVRTKSETEEVAEKLRARGFSAAAING
DVAQAQRERTVDQLRDGRLDILVATDVAARGLDVERISHVLNFDIPHDTESYVHRIGRTG
RAGRTGEAILFVTPRERRMLRTIERVTNAPLAEMDLPTVDEVNESRKSRFADSITESLED
PQLELFRGLVKAYSEAHDTPLEDIAAALATQAQIGDEFLMKEPPKDARRDRRDRRDRDRD
RDRGDRRGRGRFEAGEGKAMYRIAVGKRQHVRPGAIVGALANEGGLNSRDFGRISIFGSH
SLVELPEDLPGEVFERLEETRISGQLINLERDTGRPPRDRDRDNYRDRGRGRRDDRRGGH
RDHHDRRGGHRDDRRDDRRGGYRDRDDRRGGYRDRDDRRGGHRGGNRDRDDRRGGYRDRD
DRRGGHRGGNRDRRDRW
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgagcataaccgaaaacgccgccggcggcgagaatgcgccggagaatgtggatgagtcg
gtgaaccgggaagattcgcgcggtgtcgaggcccagacctcggagaacaccagggccgcg
gatcaggccgggcagaccgagaacgacgacgagaagaaggacagcgccgccgagggcggc
gcagaggccgcggcggacgcgcacgtggcggaagggacggcgtcggaaagcgacggcgcg
gaggacatggacgacaaggaacgcgtcgagcagggcgccgagaacgagaacgacgacgcc
aagggcgccgagaacaaggacgacgccgcgcaggacgccggcgccgacgggaagacggaa
gagaacacggacgacaagtccggcacgtccggtgcggacgagaagtccgagaaggacgac
gagaacgacaagaacgacgacgccccgggcttcgacgcgctgagcctgcccgacgacgtc
gtcgaggccgtgcgcaaggtcggcttcgagcagccctcggcgatccagcaggagaccatc
ccgctgctgatgcagggccgcgacgtggtcggcctggcccagaccggcaccggcaagacc
gcggcgttcgcgctgccgatcctggcgcgcatcgaccgctcgcagcgccacccgcaggcc
ctggtgctcgcgccgacgcgcgagctggccctgcaggtcgccgacagcttccagcagttc
gccgaccacctcggcggcatccacatcctgccgatctacggcgggcaggcctacggcatc
cagctcggcggcctgcggcgcggcgcccacatcatcgtgggcaccccgggccgtgtgatc
gaccacctcgagcgcggctcgctggacatctccaacctgcgcttcctcgtcctcgacgag
gccgacgagatgctcaacatgggcttccaggaggacgtcgagcgcatcctcgaggacacc
ccggagcacaagcaggtcgccctgttctcggcgaccatgcccaacggcatccgccggatc
tccaagcagtacctcgacaaccccgccgaggtcaccgtcaaggcggagacccgcacggcc
accaacatcacgcagcgctggctgcacgtggcccaccgcaacaagctcgacgcgctgacc
cgcatcctcgaggtcaccgagttcgaggccatgatcatcttcgtgcgcaccaagtcggag
accgaggaggtcgccgagaagctgcgcgcccggggcttctccgccgccgccatcaacggt
gacgtcgcccaggcccagcgtgagcgcaccgtcgaccagctgcgcgacggccgcctggac
atcctcgtggccaccgacgtcgccgcccgcggcctcgacgtcgagcgcatcagccacgtg
ctcaacttcgacatcccccatgacacggagagctacgtccaccgcatcggccgcaccggc
cgtgccgggcgcaccggcgaggccatcctcttcgtcaccccgcgcgagcgccgcatgctg
cgcaccatcgagcgggtgaccaacgcgccgctggccgagatggacctgccgaccgtcgac
gaggtcaacgagtcgcgcaagtcccgcttcgccgactcgatcaccgagtcgctggaggac
ccgcagctcgagctgttccgcggcctggtcaaggcctactccgaggcgcacgacacgccg
ctggaggacatcgccgccgccctggccacccaggcgcagatcggcgacgagttcctgatg
aaggagccgccgaaggacgccaggcgcgaccgtcgggaccgccgcgaccgcgaccgtgac
cgcgaccggggcgaccgccgcggacgcggccgcttcgaggccggcgagggcaaggcgatg
taccgcatcgccgtgggcaagcgccagcacgtgcgcccgggtgccatcgtcggcgccctg
gccaacgagggcgggctgaactcccgcgacttcggccgcatctcgatcttcggctcgcac
tccctggtggagctgcccgaggatctgccgggcgaggtcttcgagcgcctggaggagacc
cgcatctccggccagctgatcaacctcgagcgcgacaccggccgcccgccgcgtgaccgc
gaccgcgacaactaccgcgaccggggccgtggccggcgcgacgaccgccggggcggtcac
cgcgaccaccacgaccgccgtggcgggcaccgtgacgaccgtcgtgacgaccggcgtggc
ggctaccgggaccgcgatgaccgccgtggcggttaccgcgaccgggacgaccgtcggggt
ggccaccgtggcggcaaccgggaccgtgacgaccgacgcggcggctaccgcgaccgggac
gaccgtcggggcggccaccggggcggcaaccgagaccgtcgcgaccgctggtag
DBGET
integrated database retrieval system
