Cellulomonas flavigena: Cfla_0898
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Entry
Cfla_0898 CDS
T01230
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfl
Cellulomonas flavigena
Pathway
cfl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cfla_0898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfl03400
]
Cfla_0898
Enzymes [BR:
cfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cfla_0898
DNA repair and recombination proteins [BR:
cfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Cfla_0898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADG73807
UniProt:
D5UK65
LinkDB
All DBs
Position
981292..984936
Genome browser
AA seq
1214 aa
AA seq
DB search
MDLTGLLPALLADPAVADALASVRARGELDVVGPAGVRPPLLAALAGAVATGGAAGPGGG
RPLVVVTATGRDADELAAALRCYLPDDDVAVLPSWETLPHERLSPRSDTVARRVAVFRRL
AHPDPEPGPTGAVRVLVLPVRALLQPVVDGLGELVPVEVRTGQQVDLDDLAQRLVDAAYT
RVDMVERRGEFAVRGGILDVFPPTEDHPLRVELWGEDVEEIRWFSVADQRSLEVAEHGLW
APPCREILLTDAVRARAAALREQLPGALDMLDRLAEGIAVEGMESLAPVLVDRMVPVLDL
VPDESLLVVVDPERVRRRAHDLVATTQEFLEAAWTSAAAGAATPLDLSSASFASFAEVRA
LAAVRALGWWTLSGFTLDADAVTGDDSPATDEGPTAAPDVRTLVVGAREVERYRGEVARA
VQDVHRLQQQGWRLVLATEGHGPAQRMVEQLRAADVPARLVASVDDEPEGGVVLVTPAPL
GPGFVHEALHLAVFSESDLTGRAGSSTRDMRRMPSRRRNVVDPLQLRPGDFVVHEQHGVG
RFVELVQRTIGSGAAAATREYLVVEYASSKRGQPGDRLYVPTDQLDQVTKYVGGEAPTLN
RMGGADWQKTKGRARKAVKEIAAELIRLYSARMATPGHAFGPDTPWQRELEDAFAYVETP
DQLATIEEVKADMEKTVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQ
QHLDTFTERYAPYPVKVAALSRFQTAKESQQVVEGLADGSVDVVIGTHRLITGSVRFKDL
GLVIIDEEQRFGVEHKETLKALRTNVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEER
HPVLTFVGPYEEKQISAAIRRELLREGQVFYVHNKVESIERTASRLNELVPEARIAVAHG
KMGEHQLEQVIVDFWEKRFDVLVCTTIVETGLDISNANTLILERADRLGLSQLHQLRGRV
GRGRERAYAYFLYPPEVPLTETAHDRLQTIAAHTDLGAGMAVAMKDLEIRGAGNLLGGEQ
SGHIEGVGFDLYVRMVGEAVASFRGEQAEELPDVTIELPVDAHVPHDYIAHERLRLEAYR
KIAAATDDAGLREVHAELVDRYGPVPGPVENLFEVAQLRLHLRAAGLADVTAQGRFVRFA
PVELPESAQLRLKRLYPGAVLKPAVRTVLVPFPTTARIGGKPLHGRDVMTWVRQFVDAIV
RGDVAAAAAAGTAR
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggacctcaccggcctcctgcccgccctgctcgccgaccccgccgtcgccgatgcgctc
gcgtccgtccgcgcgcgcggcgagctcgacgtcgtcgggcccgccggtgtgcgcccgccg
ctgctcgcggcgctcgcgggtgcggtcgcgacgggcggcgcagcgggacccggcggtggg
cgtccactcgtcgtggtgacggcgacgggtcgcgacgccgacgagctcgccgccgcgctg
cgctgctacctgccggacgacgacgtcgcggtgctgccgagctgggagaccctgccgcac
gagcggctgagcccgcgcagcgacacggtggcgcgccgggtcgcggtgttccggcggctg
gcgcacccggacccggagcccggcccgaccggggcggtgcgcgtgctcgtgctgccggtg
cgcgcgctgctgcagccggtcgtcgacgggctgggggagctcgtgcccgtcgaggtgcgc
acgggtcagcaggtcgacctcgacgacctcgcgcagcggctcgtcgacgcggcgtacacg
cgtgtcgacatggtcgagcggcgcggcgagttcgcggtgcgcggcgggatcctcgacgtg
ttcccgcccaccgaggaccacccgctgcgcgtggagctgtggggcgaggacgtcgaggag
atccgctggttctccgtggcggaccagcgcagcctcgaggtcgccgagcacggcctgtgg
gcgccgccctgccgcgagatcctgctgaccgacgcggtacgggcgcgcgcggccgcgctg
cgcgagcagctgcccggcgcgctcgacatgctcgaccggctcgccgagggcatcgcggtc
gagggcatggagtcgctcgcgcccgtcctggtggaccgcatggtcccggtgctcgacctg
gtccccgacgagtcgctgctcgtggtcgtcgaccccgagcgcgtgcgccgccgtgcccac
gacctcgtcgcgaccacgcaggagttcctcgaggccgcgtggacctcggccgcagcgggt
gcggcgacgccgctggacctgtcgtccgcgtcgttcgcgtcgttcgcggaggtccgcgcg
ctcgccgccgtgcgcgcgctgggctggtggacgctgtcgggtttcacgctcgacgcggac
gccgtgacgggcgacgacagccccgcgacggacgagggtccgactgccgcgcccgacgtc
cgcacgctcgtcgtgggggcgcgcgaggtcgagcggtaccgcggcgaggtcgctcgcgcg
gtgcaggacgtgcaccggctgcagcagcagggctggcggctcgtgctggcgaccgagggg
cacggtcccgcgcagcgcatggtcgagcagctgcgcgcggcggacgtgccggcgcgcctg
gtcgcgtcggtcgacgacgagcccgagggcggcgtcgtgctggtcacgcccgcgccgctc
ggtccgggcttcgtgcacgaggcgctgcacctcgcggtgttcagcgagtcggacctcacg
ggccgcgccgggtcgagcacgcgcgacatgcgccgcatgccgagccggcgccgcaacgtg
gtcgaccccctgcagctgcgccccggcgacttcgtcgtgcacgagcagcacggtgtgggc
cgcttcgtcgagctggtgcagcgcacgatcgggtcgggcgcggcggcggccacgcgcgag
tacctcgtcgtggagtacgcgtcgagcaagcgcggtcagcccggcgaccggctgtacgtg
cccaccgaccagctcgaccaggtcaccaagtacgtcggcggtgaggcgcccacgctcaac
cgcatgggcggcgcggactggcagaagaccaaggggcgcgcccgcaaggccgtcaaggag
atcgcggccgagctcatccgcctgtactcggcgcgcatggccacgccgggccacgcgttc
ggcccggacacgccgtggcagcgcgagctcgaggacgcgttcgcgtacgtcgagacgccc
gaccagctcgcgacgatcgaggaggtcaaggccgacatggagaagacggtccccatggac
cgcctcgtgtgcggtgacgtcggctacggcaagacggagatcgccgtgcgtgcggcgttc
aaggccgtgcaggacggcaagcaggtcgccgtcctggtcccgacgacgctgctggtgcag
cagcacctcgacacgttcaccgagcggtacgcgccgtacccggtgaaggtcgcggcgctg
tcccggttccagacggccaaggagtcgcagcaggtcgtcgaggggctcgcggacgggtcg
gtcgacgtcgtcatcggcacgcaccgcctcatcaccggcagcgtgcggttcaaggacctc
ggcctggtcatcatcgacgaggagcagcggttcggtgtcgagcacaaggagacgctcaag
gcgctgcgcaccaacgtcgacgtgctggcgatgagcgccacgccgatcccgcgcacgctc
gagatggccgtcacgggcatccgtgagatgtccacgctggccacaccgccggaggagcgc
cacccggtgctcacgttcgtgggaccgtacgaggagaagcagatctccgcggcgatccgg
cgtgagctgctgcgcgagggccaggtcttctacgtccacaacaaggtcgagtcgatcgag
cggaccgcctcacgactcaacgagctggtccccgaggcccggatcgccgtcgcgcacggg
aagatgggggagcaccagctcgagcaggtcatcgtcgacttctgggagaagaggttcgac
gtcctggtctgcacgaccatcgtcgagaccggcctggacatctccaacgccaacaccctc
atcctcgagcgcgcggaccggttggggctctcgcagctccaccagctgcgcgggcgcgtg
ggccgcggccgcgagcgcgcgtacgcgtacttcctgtacccgccggaggtgccgctgacc
gagaccgcgcacgaccggttgcagaccatcgccgcccacaccgacctgggggccggcatg
gccgtggcgatgaaggacctggagatccgcggtgcgggcaacctgctcggtggcgagcag
tccgggcacatcgagggcgtcggcttcgacctgtacgtgcggatggtgggcgaggcggtg
gcgtcgttccgcggcgagcaggccgaggagctccccgacgtcacgatcgagctgcccgtc
gacgcgcacgtgccgcacgactacatcgcgcacgagcggctgcgcctggaggcgtaccgc
aagatcgcggcggccacggacgacgcgggcctgcgcgaggtgcacgccgagctcgtcgac
cgctacggccccgtcccgggacccgtcgagaacctcttcgaggtcgcgcagctgcgcctg
cacctgcgggcggcgggcctcgcggacgtcacggcgcagggccggttcgtccgcttcgcg
cccgtcgagctgccggagtcggcccagctgcggctcaagcgcctgtacccgggtgcggtg
ctcaagccggccgtccgcacggtgctcgtgccgttcccgacgaccgcgcgcatcggcggc
aagccgttgcacgggcgcgacgtcatgacgtgggtacggcagttcgtcgacgcgatcgtg
cgcggtgacgtcgcggccgccgcggcggcggggacggcgcgctga
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