Cellulomonas flavigena: Cfla_1249
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Entry
Cfla_1249 CDS
T01230
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cfl
Cellulomonas flavigena
Pathway
cfl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Cfla_1249
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfl03019
]
Cfla_1249
03400 DNA repair and recombination proteins [BR:
cfl03400
]
Cfla_1249
Enzymes [BR:
cfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Cfla_1249
Messenger RNA biogenesis [BR:
cfl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Cfla_1249
DNA repair and recombination proteins [BR:
cfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cfla_1249
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
DUF3553
HTH_IclR
DprA_WH
Cas3-like_C_2
ApbA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADG74149
UniProt:
D5UBQ4
LinkDB
All DBs
Position
1394791..1396464
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AA seq
557 aa
AA seq
DB search
MATTTQGTTGSATRRTAPTTTGGRAGATLEEAVERVLGEGTELRQAQRDALRGLTAHDTL
LVARTGAGKTAVYAIATLLAARLTVVVSPLIALQRDQERALAEAGLRVASVSSARTAAQQ
REALEAAASGGLDVLLLGPEQLQRDVVRAALGDADVGLVVVDEAHCVAEWGHDFRPDYLL
VGGVVQQLGAPRVLALTATASTHVRDEIVGRLGMRDARVLVHDADRPNIWLGARYVATQD
ERDAVVRDLVAEEPGAVVVYARTRAHCEQLAALIAEVRPASVYHAGLPAAERARVQDRFL
GGEDQLVVATSAFGMGVDRPDVRLVVHAGAPATLDQYYQEVGRAGRDEEPARGVVVVRAE
DHALSRYQRASGGPRPATLRRVLAALAEEPGDVAALVSRTGLGRRTVARAVGTLQHVAAV
RDDGGRLRLVEGVVVRRVLADVQEAGERRARLETSRVELVRTYTDTTDCRRRLLLELLGE
ERRDTCERCDSCEAGTSLTVSRQRLRSGQQVEHREFGPGTVSVVEAERVTVLFEDRGYVT
LDTQIALDSELLTLAAS
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggcgacgacgacgcagggcacgacggggagcgcgacccggaggacggcgccgaccacg
accgggggccgggcgggcgcgaccctcgaggaagcggtcgagcgggtgctcggcgagggc
accgagctgcgccaggcgcagcgggacgcgctgcgcgggctgaccgcccacgacaccctg
ctcgtcgcccgcaccggtgccggcaagacggcggtgtacgcgatcgcgaccctgctggcg
gcacggctcacggtggtcgtgtcgccgctcatcgcgctgcagcgcgaccaggagcgtgcg
ctggccgaggccggtctgcgggtcgcgtcggtgagctcggcccgcaccgcggcacagcag
cgcgaggccctggaggccgcggcgtccggtgggctcgacgtgctgctcctgggccccgag
cagctccagcgggacgtggtgcgcgccgccctgggcgacgccgacgtgggcctcgtcgtc
gtcgacgaggcgcactgcgtggccgagtggggtcacgacttccgccccgactacctgctc
gtcggcggcgtcgtgcagcagctcggcgcaccgcgcgtgctcgcgctcacggcgaccgcg
tcgacgcacgtccgtgacgagatcgtcggacgcctgggcatgcgcgacgcgcgggtcctc
gtgcacgacgccgaccgccccaacatctggctcggcgcgcggtacgtcgcgacgcaggac
gagcgggacgccgtcgtgcgggacctcgtggccgaggagcccggcgccgtcgtggtctac
gcccgcacccgcgcgcactgcgagcagctcgccgcactcatcgccgaggtgcggcccgcg
agcgtctaccacgccgggctgccggccgcggagcgtgcccgggtgcaggaccggttcctc
gggggtgaggaccagctggtggtggcgacgtccgcgttcggcatgggcgtcgaccggccg
gacgtgcgcctcgtcgtccacgccggggcgcccgcgacgctcgaccagtactaccaggag
gtcggacgggcggggcgcgacgaggagccggcgcgtggtgtcgtcgtcgtgcgcgccgag
gaccacgcgctgtcgcgctaccagcgggcgagcggggggccgcgtccggcgaccctgcgc
cgcgtgctcgccgcgctcgcggaggaaccgggggacgtggccgcgctggtgtcgcgcacg
ggcctgggccggcggacggtcgcgcgggccgtcgggacgctgcagcacgtcgcggcggtg
cgcgacgacggcggtcgtctgcggcttgtcgagggggtcgtggtgcgtcgcgtcctcgcc
gacgtgcaggaggccggtgagcgccgggcgcggctcgagacgtcacgcgtcgagctggtc
cgcacgtacaccgacaccaccgactgccgacggcggctgctgctcgagctgctgggcgag
gagcggcgcgacacgtgcgagcggtgcgacagctgcgaggcggggacgtcgctcaccgtg
tcgcggcagcggctgcggtccggccagcaggtggagcatcgggagttcgggccgggcacc
gtgagcgtcgtcgaggccgagcgcgtcacggtgctcttcgaggaccgcggctacgtcacg
ctcgacacgcagatcgcgctggactccgagctgctcacgctcgcggcctcctga
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