Cornus florida (flowering dogwood): 132268756
Help
Entry
132268756 CDS
T11641
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cflo
Cornus florida (flowering dogwood)
Pathway
cflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132268756
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cflo03041
]
132268756
Enzymes [BR:
cflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132268756
Spliceosome [BR:
cflo03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
132268756
Complex B
132268756
Complex C
U2 SnRNP specific factors
132268756
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-GeneID:
132268756
NCBI-ProteinID:
XP_059625557
LinkDB
All DBs
Position
Unknown
AA seq
774 aa
AA seq
DB search
MSKRKFGFEGFGINRQSTYNFERSQAPQRLYVPPSSRSASGSGSGAAHDNYEDTDLDNIE
YDDPDATNVAAVDGDVDEIDPLDAFMEGIHEEMKAAPPPKAKEKAEKYRDDEEDDPVESF
LRAKKDVGLTLASDALRAGYDSDEEVYAAAKAIDEGMMEYDSDDNPIVVDKKKIEPIPAL
DHSSIDYEPFNKDFYEEKPSISGMSEQEIGEYQKSLAIRASGFDVPRPIKAFDDCGFSSE
LMKAIAKQAYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEK
EEGPIGVICAPTRELAHQIYLEAKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVVGT
PGRLIDMLKMKALTMLRATYLVFDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPR
KVEKLAWEILTDPIRVTVGAVGMANEDITQVVQIIPSDVEKMPWLLEKLPGLIDNGDVLV
FASKKARVDELESELAQRGFKVAALHGDKDQASRMDTLQKFKSGTYHVLIATDVAARGLD
IKSIKSVVNFDIARDMDMHVHRIGRTGRAGDKEGTAYTLVTQKESRFAGELVNSLIAAGQ
NVSNELMDLAMKDGRFRSKRDARKGGGKRAKGRGAGGRGVRGVDFGLGIGYNPESNNISS
NTVPSRSAAVNSLRTGVMAQFKSNFVAAASNTQNQGVNHSLGSNANKKTMLSGFVSGGTI
GGDINTGQTTNSSGPAPSRGNTTSQSCKENASQQNPESSRDRPRERRRPSGWDR
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagagaaagtttggattcgaaggcttcggcatcaatcgccaatcaacctacaac
ttcgagcgatcacaagcgccccaaagactatatgttccaccttcctcacgttctgcttct
ggctctggttctggtgctgctcacgacaattacgaagacaccgacctagacaacattgaa
tacgatgacccagacgctaccaacgtcgccgccgtcgacggagatgttgacgagattgat
cctctcgatgcatttatggagggaattcacgaggagatgaaggcagcgccacctccaaag
gcgaaagagaaggcggagaagtatagggacgatgaagaggatgatccggttgagagtttc
ttgagggctaagaaggatgtgggcttgacgttggcgtccgatgctcttcgtgccggctat
gattccgacgaggaggtttatgctgctgccaaggcgattgatgagggaatgatggagtat
gattccgatgataatccaattgttgttgacaagaagaagattgagcccattcctgctttg
gatcatagttccatcgactacgagcccttcaataaggatttttatgaagaaaagccttct
atatcaggtatgagtgagcaggaaattggagaataccaaaagagcttggcgattcgtgca
tcaggtttcgatgttccaagaccaatcaaagcatttgacgactgtggattttcttcggaa
ctaatgaaagctatcgcgaaacaagcttatgaaaaacctacgccaatacagtgccaagct
ttaccaattgtgctttctgggagagatataattggtatagcgaaaactggttcgggaaaa
actgctgcttttgtgcttcctatgattgtccatataatggatcagcctgaacttgaaaaa
gaagaaggtcctattggagtaatttgtgctcctaccagagaattagcgcatcagatatat
ttagaggccaagaaatttgccaaatcgcacggaatacgtgtttctgcagtctatggtggg
atgtccaagcttgatcaattcaaagaactcaaggcaggatgtgagatagttgttggtact
cccggtagattgatagacatgctaaaaatgaaggcattgacaatgttaagggcaacttac
ctagtgtttgatgaggctgatcggatgtttgaccttggatttgagcctcaaataaggtcc
attgttggtcaaattcggccagatcgccaaaccttactcttttcagcgacaatgccccgc
aaagttgaaaagttagcttgggaaattctcactgatcctataagagttactgtgggggcg
gtgggaatggccaatgaggatattactcaagttgttcaaataattccttctgatgttgag
aagatgccctggcttcttgaaaagctacctggactaattgataatggagatgttctagtg
tttgcttcaaagaaagccagagtggacgagcttgaatcagaattggctcagagagggttt
aaagttgcagcacttcatggtgataaagatcaggcttctcggatggacacattacaaaaa
tttaaatctgggacgtaccatgttcttattgcaactgatgtcgctgcacgtggtcttgac
atcaagtcaattaagtcagtggtcaactttgatatagcaagagacatggatatgcatgtc
catagaattgggagaacaggtcgtgctggtgataaggaagggactgcatacactcttgtt
acacagaaagagtctcgatttgcaggagaattggttaacagcctgattgctgctggtcaa
aatgtgtccaatgaactgatggatcttgctatgaaggacgggagattcagatccaaacgt
gatgcaagaaaaggaggtggaaaaagggctaaaggaaggggggccggtggtcgaggtgtt
cgtggtgtggattttggtctgggcattggatataatccagaatcgaacaatatttcatcc
aacactgttccaagtcgttctgctgctgtcaattcactgaggacaggagttatggcacaa
ttcaaaagcaactttgtagctgctgcatctaatactcaaaatcagggagtaaatcatagt
ttgggatcgaatgccaacaagaagacgatgttatctggatttgtttctggaggtacaata
ggtggggatataaatactggtcagacaaccaattcatcaggtcctgctccatcaagagga
aataccactagtcagagttgtaaagaaaatgcaagtcagcaaaacccagaaagctctaga
gataggcctagagaaagaaggaggccctctggttgggaccgttaa
DBGET
integrated database retrieval system
