Cornus florida (flowering dogwood): 132269374
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Entry
132269374 CDS
T11641
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
cflo Cornus florida (flowering dogwood)
Pathway
cflo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cflo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
132269374
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cflo03019
]
132269374
Enzymes [BR:
cflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132269374
Messenger RNA biogenesis [BR:
cflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
132269374
mRNA degradation factors
3'-5' decay
Ski complex
132269374
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
132269374
NCBI-ProteinID:
XP_059626533
LinkDB
All DBs
Position
Unknown
AA seq
1357 aa
AA seq
DB search
MDRIAAANELSFRVGFSGHSGHLRVEPLPPVERSDSVKSLPDFILPPAFARETPTSIKEY
IEEKYLLPRLDTDEFSPEKAGRQWEFDWFDKAKINLEPSLPRSVVVPKWELPFRRPKRGP
EKEIWEPISVQVDVSELMAGAENSGALPRIAGPAKDFVKGSLNSRPFRPGGLDDSQSSER
ILPVGMSNGEWVREVLNGGPAQAIPPSFKQGLDLGDIKAYSSSWNVYEDQISVNRTPDEK
VAELSVQFDDLFKKAWEEDVTEFSGDVEAEVNDVELVKSESLPLDAEVNKVDVAGGVFDT
QSAVLDEILSVESRGSSSRLDGSSDGGGQQQKEFWAVSGGSEGIADRFHELVPDMALDFP
FELDTFQKEAIYYLEKGESVFVAAHTSAGKTVVAEYAFALSSKHCTRAVYTAPIKTISNQ
KYRDFCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYKGADIIRDIEWVIFDEVHYVN
DVERGVVWEEVIIMLPRHINIILLSATVPNTIEFADWIGRTKQKKIRVTGTTKRPVPLEH
CIFYSGELYKICESEIFMSQGFKAAKDAYKKKNLSTVGRGTGMYLGSSAAHDGARAQKHD
NSMRGKQNKHSGSQNLGNISRAGWGKQNNGGNQSSWGSRRSEASLWLLLINKLEKKSLLP
VVIFCFSKNRCDKSADNMTGTDLTSSSEKSEIRVFCDKAFSRLKGSDRNLPQVVRVQNLL
RRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKE
FRQLLPGEYTQMAGRAGRRGLDKIGTVVVMCRDEFPEEGDLKNTIVGSATRLESQFRLTY
IMILHLLRVEELKVEDMLKRSFAEFHAQKNLPETQQLLMRKLAQPTKAIECIKGEPTIEE
YYEMFLEAEKYSKNITEAVMQSGASQHFLTPGRVVVVKSQSAQDHLLGVVLKAPSSNIKQ
YIVLVLTPELPATLETPLSSGFSQDKESVNFQILMPKSKRGLDDEYCSSLTSKKGSGNIN
ITLPHRGSSAGVNYEVRGIDNKEFLSICNCKIKIDQVRLLEVVSSAAYSKTVQELLGLKS
DGNKYPPALDPLKDLKLNNMDLVDSYYKWNSLLQNMSQNKCHGCVKLEEHIKLAKEVKKH
KEEVNALKFQMSDKALQQMPDFLGRINVLKEIGCVDADLVVQVKGRVACEMNSGEELICT
ECLFENQLDELEPEEAVAIMSALVFQQKNTSEPSFTPKLLEAKQRLYNTAIRLAELQAQF
NLQIDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVPEGLIVRTIVRLDETCREFR
NAAAIMGNTALYKKMESASNAIKRDIVFAASLYITGV
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggatcggatcgccgcagcgaacgaactttcatttcgggtcgggttctccggtcacagt
ggtcacctcagagtcgagcccctcccgccggtcgaacgctccgacagtgtcaagtcactc
cctgacttcatacttccacctgcatttgctagagaaacacctacctcaataaaagagtat
atagaggagaaatatctactgccgagattggacactgacgagttttctccagaaaaagca
ggaagacaatgggaatttgactggtttgataaagcgaaaattaacctagagccttcattg
ccccggtctgttgtggttccgaaatgggaattacctttcagacgcccaaagaggggtcca
gagaaagaaatatgggaaccgatctcagtgcaggtggatgtatcagaacttatggctggg
gctgagaattctggtgctctgccacgcattgctggacctgcaaaggattttgtaaaagga
agcctcaatagccgtccttttcgtccagggggtttggatgattctcaatcttcagaaagg
attcttcctgttggtatgtctaatggtgaatgggtacgggaggtgcttaatggtggtcct
gctcaggcgattcctcctagctttaaacaaggattggatcttggtgatattaaagcatat
tcatcttcatggaatgtgtacgaggatcaaatttcagtcaatcgcacaccagatgaaaag
gtggctgagctttctgtgcagtttgatgacttgtttaagaaagcttgggaggaggatgtc
acagaattttcgggagatgtggaagctgaagttaatgatgtggagcttgtgaagtcagaa
tctctacccttggatgctgaagtgaataaggtggatgtggctggtggtgtttttgacact
caatcagccgtgttggatgagattttatcagttgaatcaaggggatcatcttcaagattg
gatggaagtagtgatggtggcggacagcagcaaaaagagttttgggctgttagcggaggt
agtgaagggattgcagatcgctttcatgagcttgttcctgacatggcactggactttcct
ttcgaattggatacattccaaaaggaggctatctattaccttgaaaagggggaatctgtt
tttgtggcagctcatacgtcagctgggaaaacagttgttgcagagtatgcatttgccctg
tcatcaaaacactgtactagagcagtatatactgctcccattaaaaccatcagcaaccaa
aagtacagggatttttgtgggaaatttgatgttggcctcctcactggagatgttagcttg
aggccagaggcttcttgtctcatcatgaccactgagatactaaggtcaatgctctataag
ggtgctgatatcatacgtgacattgaatgggttatatttgatgaagtgcattacgtgaat
gatgttgaaagaggtgttgtttgggaagaagttattatcatgcttccgaggcatattaat
attatcctcctttctgccacggtgccaaacacaattgaatttgctgattggattggtcga
acgaagcaaaagaaaattcgtgtaaccgggacgacaaaaagaccagtcccgttggagcac
tgcattttttattctggagaactctacaaaatctgtgaaagtgaaatctttatgtctcag
ggatttaaagctgccaaagatgcatacaagaaaaagaatttgagtacagtcggtcgtggt
actggaatgtatctggggtcttcagcagcccatgatggggctcgagctcaaaaacatgat
aattcaatgcgtggtaaacagaataagcattctggatcccagaatttggggaacatttct
cgggctggttgggggaagcaaaacaacggtggtaaccagagcagttgggggtcaaggaga
tcagaagcttcattgtggttgttgcttattaataagcttgaaaagaagtcactattacct
gtggttatattttgtttctcaaagaaccgttgtgacaaatcagctgataatatgactggg
accgacctcacaagtagttctgagaaaagtgaaattcgtgtcttctgtgacaaagcattt
tcacggctgaagggatctgacaggaacctaccacaggtggtcagagttcaaaaccttctt
cgtagaggaattggggtgcatcatgcgggactgcttccaattgtcaaagaagttgttgaa
atgcttttttgccgtggtgtgattaaggtattattttcaacagaaacatttgcaatggga
gttaatgcaccagctaggacggttgtttttgatacgcttaggaagtttgatggcaaggaa
tttagacagttacttcctggagaatacactcaaatggctggtcgtgctggcaggagagga
cttgataaaattggtacagttgttgtaatgtgtcgtgatgaattcccagaagagggggat
ttgaagaataccatagttggtagtgcaaccaggcttgaatctcagtttcgactgacctat
atcatgatcctgcatctccttcgtgttgaagaattgaaggtggaggacatgttgaaaaga
agttttgcagaatttcatgctcagaagaatcttccagaaacacagcaacttctgatgcga
aagcttgcgcagcctacaaaagctattgaatgtataaagggtgaaccaacaattgaggaa
tattatgagatgttcctggaggctgagaaatatagcaagaatataacggaggcggtcatg
cagtcaggggcttcccaacattttcttactcctggaagagtagtagtcgtgaagtcacag
tcagcccaggaccacttacttggagtcgttttgaaagctccttccagtaatattaaacaa
tatatagtattagtgctgactcctgaattaccagcaacattggaaactcctttgtcgagt
ggtttttcacaagataaagaaagcgtcaatttccagatattgatgccaaaatcgaaacgt
ggtttggatgatgaatattgttcttctctcacttcgaaaaaaggctcaggtaatatcaac
ataacgttacctcaccgtggtagttctgctggggtgaattatgaggttcgaggaatcgat
aataaggagttcctatctatatgcaattgcaaaataaagattgaccaagttcggcttctt
gaagtcgtgagcagtgctgcttattccaaaactgttcaagagctattgggtttgaaatct
gatggaaataaataccctccagcattagatccattgaaagatctgaagctgaataacatg
gatcttgtggattcttactacaagtggaatagtctattgcaaaatatgtcccaaaataag
tgtcatggctgtgttaaactggaggagcacattaagttagcgaaagaggtaaagaagcac
aaagaagaagttaatgctcttaagtttcaaatgtcagataaagcccttcagcagatgccg
gactttctgggtcggataaacgttttgaaggaaattggctgtgtggatgctgaccttgta
gtccaggtcaaggggcgtgtagcttgtgagatgaattctggggaggagttgatatgcaca
gagtgcttgtttgagaatcaactggatgaactggaaccagaagaagcggtagcaataatg
tctgcccttgtgtttcagcagaagaacacttcagaaccttcttttactcccaagctatta
gaggctaaacagagattgtacaacacggccataagactcgcggagcttcaagcacagttc
aacctacagattgaccctgaagagtatgctcgagacaatctcaagtttggtcttgttgaa
gtggtgtacgaatgggcaaagggaactccatttgcagatatatgtgagcttacagatgtt
cctgaaggtctgatagtgaggaccattgtcagactggatgagacatgccgtgaatttaga
aatgctgcagcaattatgggtaatactgcactgtacaagaagatggaatcggcctcgaac
gctataaagcgtgatattgttttcgcagctagcttgtacattactggggtgtag
DBGET
integrated database retrieval system
