Cornus florida (flowering dogwood): 132274405
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Entry
132274405 CDS
T11641
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
cflo Cornus florida (flowering dogwood)
Pathway
cflo03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cflo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
132274405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cflo03021
]
132274405
03019 Messenger RNA biogenesis [BR:
cflo03019
]
132274405
Transcription machinery [BR:
cflo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
132274405
RNA polymerase I system
132274405
Messenger RNA biogenesis [BR:
cflo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
132274405
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
KOW4_SPT5
Spt5-NGN
KOW2_Spt5
KOW7_SPT5
KOW5_SPT5
KOWx_SPT5
KOW
Spt5_N
GPKOW_C
KOW6_SPT5
ProQ_C
DUF4438
Motif
Other DBs
NCBI-GeneID:
132274405
NCBI-ProteinID:
XP_059631665
LinkDB
All DBs
Position
Unknown
AA seq
1045 aa
AA seq
DB search
MSYRRRDDDDDLEPEEDEDEYVEEEEEDEDDGDRRSSRKRRRSDFIDDVAEEDDDEEEDD
DDDEDFDGGGGGGRRGAGAHRAKRRSGSEFFDLEAAVDSDEEEEEEEGEDDFIVDGGAEL
QEEGDSRRMRHRPLLPRDDEQEDVEALERSIQARYARSNHTEYDEETTDVEQQALLPSVR
DPKLWMVKCAIGREREVAVSLMQKSIDKGSELQIRSAIALDHLKNYIYIEADKEAHVREA
CRGMRSIYATKVMLVPIKEMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAKVVDVDNVR
QRVTVKLIPRIDLQAVASKLEGREAPKKKAFVPPPRFMNVDEAREMHIRVERRRDPMTGD
YFENINGMMFKDGFLYKTVSMKSISTQNIQPTFDELEKFRQPGESGDGDMASLSTLFANR
KKGHFMKGDRVIVVKGDLKNLKGSVEKVEEGIVYIRPIKSTKEDEDLPNTLAVSDKELCK
YFDPGNHVKVVSGATEGATGMVIKVDGHCVIIVSDTTKEDIRVFADNVVESSEVTSGVTR
IGDYELHDLVLLDDNSFGVIIRVEKEALQVLRGVPERPEVKLVRLREIKCKVERKSFAQD
RTKNTISVKDVVRILEGPCKGKQGPVEHIYRGILFIYDRHHLEHAGFICVKSQSCVVVGG
SRANGDRNGNSLNSRFAHLRTPPRVPESPRRFSRGAPPSAGGRHRGGRGHDALVGTSIKI
RQGPFKGYRGRVVDVKGSSVRVELESQMKVVSVDRNHISDNVVVSTPYRDTPRYGSGSET
PMHPSRTPLHPYMTPGREPGATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNPASWGT
SPQYQPGSPPSRAYEAPTPGSGWANTPSGNYSEAGTPRDSSPAYANAPSPYLPSTPGQPM
TPSSAYLPTTPGGQPMTPGSGGLDIMSPVVGGDSEGPWFLPDILVNVRRSGEDNGVGVIR
EVLPDGSCRVALGTSGNGDTISVLPNEMEIIVPRKNDKIRIMGGAQRGLSGKLIGVDGTD
GIVKVDDTLDVKILDMVILAKLAQP
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgtcttaccggcggcgagacgacgatgacgatctcgagccagaggaagacgaggacgaa
tatgtcgaggaggaggaggaggatgaggatgacggtgaccgcaggtccagccgtaagcgg
cggagatccgatttcatagacgacgtcgcggaagaggacgatgatgaagaggaggacgac
gacgacgatgaggattttgatggcggaggcggcggcggtcgtcgtggtgctggtgctcac
cgcgcgaagaggcggtcggggtctgaattcttcgacctcgaggcggctgtggacagcgat
gaagaagaggaggaggaagagggcgaagacgacttcatagtggatggtggagctgaactt
caagaagaaggtgattctagaaggatgcgccatcgccctttgctgccaagagatgatgaa
caagaagatgttgaagctctcgaaagaagtattcaagcaagatatgctaggtcaaatcac
acagaatatgatgaagaaacaacagatgtagaacaacaagctcttctgccatccgttagg
gatccaaagctgtggatggtcaagtgtgcgattggtcgtgagcgggaggtagctgtttct
ctaatgcaaaagtccattgacaaaggatctgaattgcaaattcggtcagctatagccctt
gatcatctcaaaaattatatatatattgaagcagacaaagaagcccatgtgagagaggct
tgcaggggcatgcggagcatatatgcaactaaagtaatgcttgtgcctattaaagaaatg
actgatgtcctttctgtagaaagcaaagctattgatctttcccgggatacttgggtcaga
atgaagattgggacatacaaaggggaccttgcaaaagttgtggatgtggataatgtacga
cagagagttacagtgaaactaattccaaggatcgatttacaggctgtggcaagcaaattg
gaaggtagagaagccccaaagaagaaggcatttgttcctcctccacgttttatgaatgtt
gacgaagcgagagaaatgcatatccgtgtggagcgtagacgagatccaatgaccggtgac
tattttgaaaatataaatggcatgatgttcaaggatggtttcttatacaaaactgtgtcc
atgaagtcaattagcactcagaacatacaaccgacttttgatgagcttgagaaattccgg
caacctggtgagagtggagatggagatatggctagtctatccactttattcgcgaacagg
aagaagggtcattttatgaaaggtgatcgggttattgttgtcaagggtgatttgaagaat
ttaaagggttcagttgagaaagtcgaggaaggcattgtttatattagaccgataaagtcg
acaaaagaggatgaggaccttccgaatactcttgctgtaagcgataaggaactttgcaag
tactttgatcccggtaatcatgtgaaggttgtctctggtgcaacagaaggtgcaaccggt
atggttatcaaggttgatgggcattgtgtaattattgtgtctgatacaactaaagaagat
atacgcgtatttgctgacaatgttgtcgagagctctgaggtaacgtctggtgttacccga
ataggggactatgagcttcacgatcttgtgctgttggatgataatagctttggtgtaatc
ataagagtggaaaaagaagctttacaggttcttaggggagttccggaaagaccagaagtc
aagcttgttagattaagagagataaaatgcaaagttgagaggaaatcatttgcccaagat
cggacaaagaacacaatatcagtgaaagatgttgttaggattcttgagggtccatgcaaa
ggcaaacaaggtcctgttgaacatatttacagaggaattttgtttatctacgatcgtcat
caccttgagcatgctggctttatctgcgttaaatctcaatcttgcgtggttgttggtgga
tcacgtgccaacggtgatagaaatggtaattcactgaattcaagatttgcacatctgaga
actccacctcgtgtgcccgagtctccaaggagattttctagaggcgcccctccctcagct
ggaggaaggcatagaggtggaagagggcatgatgctttggttggtacttctattaaaatt
cgccagggcccctttaaaggctaccgtggtcgtgttgtagatgttaaaggttcatcagtc
cgggttgaattggagtcccagatgaaggttgtttcagttgatcgcaatcatatatctgac
aacgtggttgtttcaactccataccgtgacacgcctcgatatggttccggaagtgagacc
ccaatgcatccttcaaggacaccgctacatccatatatgactcctgggagagagccagga
gcaacacctattcatgatgggatgaggaccccaatgcgtgacagagcatggaatccctat
acacccatgagtccaccaagggataattgggaagatggaaatcctgcttcctgggggacg
agtccacagtatcagccaggaagccccccttcaagggcatatgaagcaccaactcctggt
tctggttgggctaatactcccagtggcaattatagtgaggctggaactccaagggatagc
agtcctgcctatgcaaatgctccaagcccttacttaccatcaactcctgggcagccaatg
acaccaagttcagcctatttacctaccactcctggtgggcaaccgatgacacccggaagt
ggtggtttggatattatgtcaccagtagtaggtggggacagtgaaggaccttggttcttg
ccagacatattggtcaatgtacgcaggtctggtgaagacaatggtgtgggagttattcga
gaggtgctaccggatggttcttgtagggttgctcttggaactagtggcaatggtgacaca
atctctgtcctacccaatgaaatggagataattgtaccgaggaagaacgataaaatcagg
atcatgggtggtgcacagcgcgggttatctggaaagctgattggtgttgatggaactgat
ggaattgttaaagtagatgatacacttgatgttaagattttagatatggtcatactggcc
aagctagcacaaccttga
DBGET
integrated database retrieval system
