Cornus florida (flowering dogwood): 132281957
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Entry
132281957 CDS
T11641
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like isoform X1
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
cflo Cornus florida (flowering dogwood)
Pathway
cflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132281957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cflo03041
]
132281957
Enzymes [BR:
cflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132281957
Spliceosome [BR:
cflo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
132281957
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
AAA_22
DEAD
AAA_19
PWI
AAA_30
nSTAND3
T2SSE
Cas3-like_C_2
ABC_tran
TRI4_N
AAA_16
nSTAND_NTPase5
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
132281957
NCBI-ProteinID:
XP_059639586
LinkDB
All DBs
Position
Unknown
AA seq
1051 aa
AA seq
DB search
MGSDLKTWVSDKLISLLGFSQPTVVQYVIGLSKQASSPTEFVGKLVDIGLSSTSETRAFA
EEIFAKVPHKASGLSLYQRKEREAAMLVRKQKTYTILEDDDDDGDDVGGGVGNNSVAAAS
LSRKTDNRKKRFRKKTENQEDENDEIVANGEGERRVKRRASEDEDDDSESEEERLRDQRE
REQLERNIRERDAAGTKKLTEPKLTRREEEEAIRRSNALEEDDINSLRKVSRREYLKKRE
HKKLEEIRDDIEDEQYLFQGVDLTEVERRELRYKKEIYELVKKRSEEADDVAEYRMPDAY
DEEGGVNQEGRFSVAMQRYRDPSAADKMNPFAEQEAWEEHQIGKATLKFGSKNRKQIADD
YQFVFEDQIEFIKASVMDGANFEDKLSTESIEKSMAKSAFMNLQDERKTLPIYPYRDELL
KAVEDHQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARVSQEMG
VKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTD
ILFGLVKDIARFRKDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRFPVEIHYTKAPEAD
YLDAAIVTALQIHVTQEPGDGDILIFLTGQEEIETAEEILKHRTRGLGTKIAELIICPIY
ANLPTELQAKIFETTPEGARKVVLATNIAETSLTIDGIKYVIDPGFSKMNSYNPRTGMES
LLVTPISKASAMQRAGRSGRTGPGKCFRLYTAYNYYNDLEDNTIPEIQRTNLANVVLTLK
SLGIHDLLNFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMI
VASEKYKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARLNFHAGNVGDHIALLKVYSS
WKETNFSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEMTSDPNDLEAIKKAITSGF
FPHSARLQKNGSYRTVKHPQTVYMHPSAGLAQVLPRWVIYHELVLTTKEYMRQITELKPE
WLVEIAPHYYQLKDVEDPGAKKMPRGEGRAS
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atggggagtgatttgaagacgtgggtttcagacaagttgatctctcttttgggattctcg
cagcctacagttgtccaatatgtcattgggttatcaaagcaagcttcatctccaactgag
tttgttggcaagcttgtagacattggattatcatccacaagtgaaactcgtgcgtttgca
gaagagatttttgcgaaagttccacataaagcctctgggttgagtctttatcagagaaaa
gaaagagaggcggcaatgctggtaaggaagcagaagacttacacaattttggaggatgat
gatgatgatggagacgatgttggtggtggtgttggcaataactctgttgcagcagcttcc
ctgagcagaaaaacagataaccgcaagaaacgcttcaggaagaagactgaaaaccaagaa
gatgaaaatgatgagatagttgcaaatggggaaggggaaagacgagttaaaagacgggct
tctgaggatgaggatgacgattctgagtcggaggaagaaagattgcgtgaccaaagagag
agggagcagttagagcgcaatataagggaacgggatgcagctgggacaaagaagttaacc
gagccaaaattaaccagaagagaagaagaagaggcaattcggagatctaatgctttggag
gaagatgacatcaattctttaagaaaagtttcaaggcgagaatacttgaagaaaagggag
cacaagaaactggaggagatcagagatgatatagaagatgaacagtatctatttcagggc
gttgacttgactgaagtagaacgtcgtgagctgagatacaagaaagaaatatatgagctt
gttaagaagcgatctgaagaggctgatgatgttgccgagtataggatgcccgatgcgtat
gatgaggaagggggtgtcaatcaagaggggaggttttctgtggctatgcagcgttacagg
gacccgagtgctgcagataaaatgaacccgtttgcagaacaagaagcgtgggaggagcat
cagattggaaaggcaactctcaagtttggttcaaaaaatagaaagcaaatagctgatgat
tatcagttcgtgtttgaagaccagattgagttcataaaggcatcggtcatggatggtgct
aattttgaagataagttgtccaccgagtcaattgaaaaatctatggcaaaatcagcgttt
atgaaccttcaggatgagagaaagactttacccatctatccatatcgcgatgagttactc
aaagctgttgaggatcatcaggtccttgtcattgttggagagacgggttctggaaagact
actcagataccccaatatcttcatgaggctgggtacacaaagcgtggaaaggttggatgt
actcagccacggcgagttgctgctatgagtgttgctgctcgagtttctcaagaaatgggt
gtcaaacttgggcatgaggttggttactctattcgttttgaagattgcacttcagaaaag
acgattctgaaatatatgactgatggaatgttattgcgagagttccttggcgagcctgat
ctggcaagctacagtgtggtgatggtggacgaagctcacgaaagaacactctcgaccgat
attttgttcggtttagtaaaggatattgcccggtttcgtaaagatctaaagttgctcatc
tcaagtgcgactcttgatgcagagaagttcagcgattatttcgattctgctccaattttt
aaaatacctgggaggcggtttcctgttgaaattcactacacaaaggcaccagaggctgat
tatttggatgcagcaattgttacggctcttcaaattcatgtgacacaagaacctggtgat
ggtgatatactgatcttcctcactggccaggaggaaattgaaacagctgaggagatactt
aaacataggacgagggggctaggaactaaaattgcagagttgattatatgcccaatttat
gcaaacctcccaacagagctgcaggcaaaaatatttgaaactacaccagaaggggcgcgt
aaggttgtcctggcaacaaacatagctgaaacttcattgaccattgatgggattaaatat
gtaattgatccgggattttccaagatgaattcttataacccacggactgggatggagtca
ttactggtcactcccatctcaaaagcatctgcaatgcaacgggctggtcgatctggacga
acagggcctggaaagtgctttcggttgtatactgcctacaactattacaatgacttggaa
gataataccatccctgagatacaacgcaccaatcttgcaaatgttgtgcttactcttaag
agccttgggattcatgacttgctgaattttgactttatggacccaccgccagctgaagct
ttactgaaagccttggaactgctctttgctctgagtgcactcaataagttaggtgaattg
acaaaggttggtagaagaatggcagagttccctcttgatcccatgctatctaagatgatt
gtggcatcagagaaatacaaatgctcagatgaaattatatcgattgctgctatgctttct
attggaaactcaatcttttatcgaccaaaggataaacaagtccatgctgataatgcgcga
ttgaattttcacgctgggaatgttggagatcatattgcattgctgaaggtgtacagttcc
tggaaggaaaccaatttctcgactcagtggtgttatgaaaattacatccaggtcaggagt
atgaagcgtgcaagagatataagagaccaattggaggggctgttggagagagttgaaata
gaaatgacatcagaccccaatgatctagaagcaataaagaaggctataacatcaggtttt
ttcccccattctgcaaggctgcagaagaatggatcttatcgaacggtcaaacatcctcag
actgtctatatgcaccccagcgctggtttagcacaagtgcttccaagatgggtcatctac
catgaactggttctgacaaccaaggaatacatgcggcagatcactgaactaaaacctgag
tggctggtggaaatagctcctcattattaccagttgaaagatgtcgaagatccgggagca
aagaaaatgcctcgtggagaaggacgtgcatcctaa
DBGET
integrated database retrieval system
