Cornus florida (flowering dogwood): 132284656
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Entry
132284656 CDS
T11641
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14 isoform X1
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
cflo Cornus florida (flowering dogwood)
Brite
KEGG Orthology (KO) [BR:
cflo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cflo03400
]
132284656
Enzymes [BR:
cflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
132284656
DNA repair and recombination proteins [BR:
cflo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
132284656
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
DExH14_plug
ResIII
Helicase_C
AAA_30
AAA_19
DEXQc_Suv3
SAM_3
Motif
Other DBs
NCBI-GeneID:
132284656
NCBI-ProteinID:
XP_059642763
LinkDB
All DBs
Position
Unknown
AA seq
2087 aa
AA seq
DB search
MLLQLPRFTNSLRDPFDVDQAYLQRKTILQHHKSRSSANSVDESELARKIVHRWEEASFE
VRQAYKQFIGSVVELIDGEVASEEFREVALIVYGLFGGPAQEDGDDRRIIEKKLELQKLL
GHVVSDANLRKIASLAQRLSGLQPDEHRAMFVPERQLNEGGDDLEFGADLVFRPPTRFLV
DVSLEDGELLGDESIAPSSSSHHEGWYDHGNSTDYHFAVDGLHFDLVWLRGACDKIVKES
ASQLSQDELAMAICRVLDSDKPGDEIAGDLLDLAGDGAFGTVQELISHRKELVDAIHHGL
LMLKGDKMPSSTQTRMPSYGTQVTVQMESERQIDKLRRKEEKRHRRGTDNGVENDLSATS
FNSLLQASERKSPFDDLIGCGEGHAATALPQGTVRKNYKGYEEVIIPPTPTAPMKPGEKL
IEIKELDDFAQAAFHGYKSLNRIQSRIFRTTYYSNENILVCAPTGAGKTNIALIAVLHEI
GQHFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSHRLSPLNMTVKELTGDMQLSRNELEE
TQMIVTTPEKWDVITRKSSDMALSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQVEST
QSMIRIVGLSATLPNYLEVAQFLRVSPDKGLFFFDSSYRPVPLAQQYIGISEPNFHARNE
LLNEICYNKVVDSLRQGHQAMIFVHSRKDTGKTADKLVEISQNKEDLEIFKNETHPMFDL
MKREVLKSRNKQVVQLFEKGFGIHHAGMLRADRGLTERLFSEGILKVLVCTATLAWGVNL
PAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLAYYLR
LLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMKMNPLAYGIGWD
EVVADPSLSLKQRALVSDAARSLDKAKMMRFDEKSGNFYCTELGRIASHFYIHYSSVETY
NEMLRRHMNDSEVIDMVAHSSEFENIVVREEEQNELETLVRTACPLEVKGGPSNKHGKVS
ILIQLYISRGSIDAFSLVSDAAYISASLGRIMRALFEICLRRGWCEMSLFMLEYCKAVDR
QIWPHQHPLRQFDKDISSEILRKLEERGADLDRLQEMQEKDIGALIRYAPGGRVVKQYLG
FFPSIQLSATVSPITRTVLKVDLLITPDFLWKDRFHGAAQRWWILVEDSENDHIYHSDLF
TLTKRMAKGEPQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYTISFQNLALPEARTSH
TELLDLKPLPVTALGNRTYEALYNFSHFNPIQTQAFHVLYHTGNNVLLGAPTGSGKTISA
ELAMLHLFNTQPDMKVIYIAPLKAIVRERMIDWRKGLVSQLGKKMVEMTGDYTPDMKALL
SADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQ
TERTVRFVGLSTALANAHDLADWLGVGETGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMN
SMNKPTYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDEHPRQFLSMPEDALQMI
LSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHL
VIIKGTEYYDGKAKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE
PFPVESSLREQLHDHMNAEIVSGTICHKEDAVHYLTWTYLFRRLMVNRAYYGLEDTEPGI
LSSYLSSLVQNTFEDLEDSGCIRMNEDIVEPMMLGSIASQYYLSYMTVSMFGSNIGPDTS
LEVFLHILSGASEYNELPVRHNEENYNEGLSEKVPYMVDKNRLDDPHVKTNLLFQAHFSQ
LELPISDYITDLKSVLDQSIRIIQAMIDICANSGWLSSAITCMHLLQMVMQGLWFAKDSA
LWMLPCMTDDLVDSLTKRRSQNVQQLLDLPKATLQAVLGSSTASRLYQDLQLFSRVQVRL
KLERKDHEGGKLTLNIRLEYTNSRRRTSRAFTPRFPKVKDEAWWLVLCNTSTAELYVLKR
VSFSGRLITQMDLPSAPTAIEGMKLILVSDCYLGFEQEHSIEELLES
NT seq
6264 nt
NT seq
+upstream
nt +downstream
nt
atgttgcttcaacttcctcgtttcacgaactctctcagagacccattcgacgtcgatcag
gcatatctccaacgcaaaaccatcctccaacatcacaagtctcgcagttctgcaaactcg
gttgatgaatcagaacttgcacgaaagattgttcacagatgggaagaagcttcatttgaa
gtgcggcaagcatacaaacagttcataggctccgtcgttgagttgatcgatggagaagta
gcatctgaggagtttcgggaggtggcattgattgtttatgggctttttggtggacctgcg
caggaggacggagacgacaggaggatcatcgagaagaagttggaattacagaaattactt
ggccatgttgtttcagatgcaaatttacgaaaaattgcctctcttgcacagaggctttcg
ggcttacagccagatgagcatagggccatgtttgttccagaaaggcaattaaatgagggt
ggtgatgatttagaatttggtgctgatcttgttttccgccccccaactcggtttctggtt
gatgtttctttggaggatggagaattactgggggatgaaagcattgcgccttcttcttct
tcacatcacgagggatggtatgatcatggtaactccacagattaccattttgctgttgat
gggttacactttgatttggtgtggttgagaggtgcatgtgataaaatagtgaaagaaagt
gcttcacagctttcacaagatgaactagcaatggccatttgccgggttcttgattcagac
aaacccggtgacgagatagctggtgatttgttggatcttgctggggatggcgcatttgga
actgttcaagagctaatatcgcacagaaaggaacttgttgatgctatacaccatgggttg
ctaatgctgaaaggcgacaaaatgcccagtagcactcaaacacggatgcccagttatggt
actcaggtaactgttcaaatggagtctgaacggcaaattgataaacttcgtcgcaaggag
gaaaaacggcatagacgtggaacagataatggggttgagaatgacttatctgccactagt
tttaattctttacttcaagcgagtgagaggaaaagcccttttgatgatttgattgggtgt
ggtgaagggcatgcagctactgcccttccacaaggaactgttcggaagaattacaaggga
tatgaagaagtgataattcccccaacaccgactgcaccaatgaaacctggggaaaaactg
attgagataaaggagttagatgactttgctcaagctgctttccatggctacaagtctctc
aaccgtattcagagcagaatattccgtaccacttattacagtaatgaaaacatactagtt
tgtgctccgacaggagctggcaaaacaaatatagctctgattgctgtcctacatgagatt
ggacagcacttcaaggatggttacttgcataaagatgaatttaagatagtttatgttgct
cctatgaaggcattagctgcagaggttacatcaacatttagccatcgtttatctccattg
aatatgactgtgaaagaacttactggagacatgcaactttctaggaatgaactcgaggaa
actcagatgatagtgacaacacctgagaaatgggatgtcattactcgtaaaagcagtgac
atggcactctcaatgctggtgaagctcctaatcattgatgaggtacatctgttgaacgat
gatagaggccctgtaatagaggcattagttgctcggacccttcgtcaggtggagtccaca
cagtctatgatacgcattgtgggactttcagccactcttcccaactatttggaggttgca
caatttctgagggtcagtccagataaaggtctcttcttctttgattctagctatcgtcca
gtgcctcttgcacagcagtatattggaattagcgagccgaacttccatgctcgtaatgag
ctattgaatgaaatatgctataataaggttgttgattcattaaggcaagggcaccaagct
atgatttttgttcattcacggaaggacacggggaaaacagctgataaactggttgaaatt
tcccagaataaggaagatttggagatatttaagaatgaaacacaccctatgtttgacttg
atgaagcgggaagttctcaagtccagaaacaagcaggttgttcaactttttgaaaaaggg
tttggtattcatcatgccgggatgttacgtgccgacagaggtctgactgagcggcttttc
tctgaaggaattttgaaagtacttgtttgcacagcaaccttggcatggggcgtaaatcta
cctgctcacactgttgtgattaagggtactcaattatatgatccaaaggctggtgggtgg
cgagatttaggcatgcttgatgttatgcagatctttggacgtgctggaagacctcagttt
gacaaaagtggcgaaggcattataatcacatcccatgataaactagcctactatctacga
ctattgacgagtcaactccccatagaaagtcagttcattagctccttgaaagataattta
aatgcagaggtggcattgggtactgtgacaaatgtcaaggaagcttgcgcatggcttggg
tatacctatctttttataaggatgaaaatgaatcctttggcatatggtattggatgggat
gaggttgttgcagatccttctttgagtttaaagcaaagagctcttgtgtcagatgctgct
cgttcactagacaaggcaaaaatgatgcgatttgacgagaaaagtggcaatttttactgt
actgagcttggtcgcattgctagccacttctatattcattattctagtgttgaaacttac
aatgaaatgttgagacgccacatgaatgacagtgaggtaattgacatggtagcccactct
tctgaatttgaaaatattgttgttcgagaggaggaacaaaatgagcttgaaacattggtc
cgcacagcttgccctttagaagttaagggtggtccctcgaataagcatggaaaggtttca
attctcattcagttgtatatatctcgtggctcgattgatgccttttcgttagtttctgat
gctgcatatataagtgcaagcttgggacgtatcatgcgggctctatttgaaatttgtttg
cgcagagggtggtgtgagatgtctttgttcatgttggaatactgcaaggctgtggatcgt
caaatttggcctcatcaacatcccctcagacaatttgacaaggatatttcatcagaaata
ctgaggaagcttgaagagcgaggggctgacttagatcgcctacaagagatgcaggaaaaa
gacattggagctttgattcgttatgcacctggaggaagggtggttaagcaatatttagga
tttttcccgtcgatccagttgtctgctactgttagtccaataaccagaaccgttttgaag
gtggatttgctcataacaccagattttctgtggaaggatcgttttcacggtgctgcacaa
cgttggtggattctggttgaggattctgagaatgatcatatctaccattcagaccttttc
acattgacaaagcggatggcaaaaggagaaccacagaagctttcctttacagttccaatt
tttgaaccacatcctcctcaatactacattcgtgctgtttctgattcttggttgcatgca
gaggctttctacactatttctttccagaatctagcacttccagaggctcgtacatcccac
actgaacttctagatttgaaacctctccctgtgactgcacttggcaacagaacttatgaa
gccttgtacaacttttcacacttcaatcctattcaaacacaggcttttcatgtcctgtat
cacacaggcaacaatgttttgttaggagctcctactggaagtgggaaaactatatctgct
gagcttgctatgcttcatttattcaacacccagcctgatatgaaggtcatttacatagca
cctctgaaggctattgttcgagaaagaatgattgattggaggaagggtcttgtttctcaa
cttggaaaaaagatggttgaaatgactggggattatactccagatatgaaggctttgttg
tcagccgacatcataatttctactcctgagaagtgggatggtatcagtcgtaactggcac
agtcgaagctatgtcacaaaggttgggcttatgattttggatgagattcacttacttgga
gctgatcgtggacccatacttgaggttatagtgtcaaggatgagatacatatcatctcaa
acagaacgcacagttcggtttgtgggcctttcaacagctttagcaaatgcacatgatttg
gctgactggctgggagtcggagaaactggactcttcaatttcaagccaagtgtgaggcct
gtgcctcttgaagttcatattcagggatatcctgggaagttttactgtccgaggatgaat
agcatgaataaacccacatatgctgccatatgtacccattcacctacaaaaccagttcta
atttttgtttcatctcgtcggcagacaaggctcactgctttggacctcattcagtttgca
gcttcagacgaacacccaagacaatttctgagtatgccagaagatgcgctacagatgatt
ctttctcaggtcactgatcagaatctgaggcacacattacaatttggcattgggttacac
catgcaggattgaatgataaagacagatctctggttgaggaactttttgctaataataag
attcaggtgttggtgtgcacaagtacattagcatggggtgtaaaccttcccgctcatttg
gtcattatcaagggaacagaatattatgatggaaaagcgaaacgatatgttgatttccct
atcacagatatcttgcaaatgatgggtcgtgcaggtcggcctcaatatgatcaacatggg
aaagctgtcattcttgttcatgaacccaaaaagagcttctataaaaagttcctgtatgaa
ccatttccagttgagagtagtctgagggagcagttgcatgatcacatgaatgctgagata
gtttctggaacgatatgccataaagaagatgcagtccattatctcacctggacttatttg
tttcgtagattgatggttaatcgagcttactatggcttagaggataccgaacctggaatt
ctaagttcttacttgtcgagcctagtacaaaacacatttgaggatttggaggacagtgga
tgcatcagaatgaatgaagacattgttgagcctatgatgttgggttcaatagcatctcag
tattaccttagctacatgactgtatcaatgtttggttcaaatataggaccagatacatca
cttgaagttttccttcatatactatctggtgcttctgagtataatgagcttcctgtgcgg
cataatgaggaaaattacaatgaaggattgtctgagaaagttccatatatggtggataag
aatcgcctagatgatccacatgttaaaacaaatctgctttttcaggcacatttttctcag
ttggaattgcccatcagtgactatattacagacttaaaatcagtgttagatcaaagtata
cgtatcatccaggcaatgatagatatatgtgctaacagtggatggctttcaagtgcaatt
acttgtatgcatcttttgcaaatggtcatgcagggtttatggttcgccaaggattctgct
ctatggatgttaccatgcatgactgatgatcttgtggattcgttaactaaaagaagatct
caaaatgtccagcaactattggatcttcctaaagcgactttgcaggctgtccttggaagt
tcaactgcttcaagattatatcaggatctgcagcttttttctcgtgttcaagtgagatta
aaacttgagagaaaggaccatgagggtgggaaattaactctgaacattagattggaatat
acaaactcccggcgaaggacatcaagagcttttacccctcgattcccaaaggtaaaagat
gaagcttggtggttggttctttgcaatacctccaccgctgaactatatgttctgaagaga
gtttcattctcgggccgtttgatcacccagatggacttaccatccgctccaaccgccatt
gaggggatgaagcttatccttgtatcagattgttatctcggttttgaacaagaacactcc
atcgaagaactccttgaatcgtag
DBGET
integrated database retrieval system
