Cornus florida (flowering dogwood): 132295143
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Entry
132295143 CDS
T11641
Name
(RefSeq) flowering time control protein FY isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
cflo Cornus florida (flowering dogwood)
Pathway
cflo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cflo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
132295143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cflo03019
]
132295143
Messenger RNA biogenesis [BR:
cflo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
132295143
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_IFT122_1st
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
WD40_Gbeta
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
ANAPC4_WD40
DSE1_N
ASA1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_Aladin
CFAP251_N
Beta-prop_RIG_2nd
Beta-prop_WDR41
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
eIF2A
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_NOL10_N
Beta-prop_SPT8
NBCH_WD40
PAC11
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_HPS5
WD40_like
WD_LRWD1
Tricorn_2nd
Beta-prop_DCAF12
Beta-prop_WDR11_2nd
WDR54
Motif
Other DBs
NCBI-GeneID:
132295143
NCBI-ProteinID:
XP_059649253
LinkDB
All DBs
Position
Unknown
AA seq
764 aa
AA seq
DB search
MMYGDQHHHHLQQQQQPPHPQHPPPPPPQQQQQQQHQPMMGEYPRGPQQPPPPPMMRQPS
ASSTTLNAPEYHHQPPAQPPYDAHADSFAAKRMRKIGQRRTVDYTSTVVRFMQIRMWQRD
ARDRTVLQPTPAAAIDMLPAVAYSDNPSTSFATKFVHTSLNKNRCSINRVLWTPSGRRLI
TGSQSGEFTLWNGQSFNFEMILQAHDQAIRSMVWSYNENWMVTGDDGGSIKYWQNNMNNV
KANKTAHKESVRDLSFCRTDLKFCSCSDDTTVKVWDFARCQEERSLAGHGWDVKSVDWHP
TKSLLVSGGKDNLVKLWDAKSGRELSSFHGHKNTVLCVKWNQNGNWVLTASKDQIIKLYD
IRAMKELESFRGHRKDVTALAWHPFHEEYFVSGSFDGSIFHWLVGHENPQVEIPNAHDNS
VWDLAWHPIGYILCSGSNDHTTKFWCRNRPGDPSRDKFNMGHIQGYGEQNPALAGRMPGN
FPGPETPTTPGPFAAGLTRNEGTIPGVGVAMPLSIPSLDSSAQGEQKPFLQVSMPSGAPP
LPPGPHPSLLVANQQQAYQQNAQQVQQQHQALPQQMSSMPLPPQNLPQLQPPSHLPLLPH
PHLPRPPPQLPPHGMPSSMPSSVPGSMPSSMPTSLQMQMPGPMGMQSTMNQMIRPLPQGH
FMGMNPMHSGSLPHGGGPQVGGIPNGLPNMQGPSNASGNQMYPPGGAFNRPQGGQMPSMP
GLNPYQSGNPNATGMGTMPSNFGLPSGVPPPLPPGPPPHGQTQQ
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atgatgtacggtgatcaacatcatcaccatcttcagcagcagcagcaaccaccacacccg
caacatccaccgccgccgccgccgcagcagcagcagcagcagcagcatcagccaatgatg
ggcgagtatccgagggggccgcaacagccaccgccaccgccgatgatgcgacagccctct
gcttcttctaccactctcaacgcaccagagtatcaccaccagccgcctgctcaaccccct
tacgatgctcatgcagacagttttgctgcaaaaagaatgagaaagattggtcaaaggagg
accgttgattatactagcaccgtggtgcgatttatgcagattcgtatgtggcagcgggat
gcaagggacaggacagtattgcaacctactccagcagcagcaattgatatgttgccagcg
gttgcctattcagataatccttctacaagctttgccacaaagtttgttcatacatcgcta
aacaaaaatcgttgttcgattaatcgggttttgtggactccctctgggaggcgtcttatt
acaggctctcaaagtggggaattcactctttggaatggtcagtcatttaattttgaaatg
attctgcaggctcatgatcaagcaatcaggtctatggtttggagttacaatgagaactgg
atggtcactggtgatgatgggggctcaataaagtactggcaaaacaacatgaataatgtg
aaggccaataaaaccgctcataaagaatcagtccgtgacttaagcttctgtaggacagat
ttgaaattttgttcttgctccgatgatactactgtaaaggtttgggacttcgctcggtgt
caagaagagcgctcattggctggccatggttgggatgtgaaaagtgttgactggcatcct
acaaagtctttactagtttcaggtgggaaagacaaccttgtgaaactttgggatgcaaag
tctgggagagagctttcttcatttcatgggcacaagaatactgttctttgcgtcaaatgg
aatcagaatggtaactgggtgctcactgcttcaaaggatcaaatcatcaagctttatgac
ataagggctatgaaggagcttgaatcttttcgtgggcaccggaaggatgtgactgcattg
gcatggcatccattccatgaagaatattttgtgagtggtagttttgatggatcaattttc
cattggctagtcgggcatgaaaatccccaggttgaaattcccaatgctcatgataatagt
gtttgggatcttgcatggcatcccattggatacattctttgcagcggtagcaatgatcac
acaacaaagttttggtgcagaaataggcctggggatccatctcgcgataaatttaacatg
ggccacatccaaggttatggtgagcaaaaccctgctcttgctggtcgcatgcctggtaat
ttccccggaccagagacccctacaactcctggaccatttgcagctgggttgacacgaaat
gagggaaccattccgggtgttggagttgcaatgcctttatctattccatctcttgattca
tcagcccagggagagcagaagccgtttctacaagtctcaatgccttcaggagcacctcct
ctcccgcctggtccacatccatctcttctcgttgccaatcaacagcaagcatatcaacaa
aatgctcagcaagtccaacaacagcaccaggcactcccacagcaaatgtcctcaatgcct
ctgccacctcaaaatttgccacagctacaaccaccatcccatttacccctgcttccacat
cctcatttaccccgccctccgccccagctacccccacatggtatgccttcaagcatgcca
tcttcagtgcctggatctatgccttcatcaatgcccacttcacttcaaatgcagatgcct
ggtccaatggggatgcaaagtacaatgaatcagatgattcgtccattgccgcagggccat
tttatgggcatgaatcccatgcactcgggatccctacctcatggtggtggtcctcaagtt
ggaggaattccaaatggattgccaaatatgcagggcccttcaaatgcaagtgggaaccaa
atgtatccgccagggggtgctttcaaccggccacaaggtggacagatgccgtcaatgcca
ggacttaatccttaccagtctgggaatccaaatgccactggcatggggacaatgccatca
aatttcggtcttccatctggggttccgcccccgctccctccaggtcccccaccacatggc
caaacacagcagtag
DBGET
integrated database retrieval system
