Cornus florida (flowering dogwood): 132295520
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Entry
132295520 CDS
T11641
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
cflo Cornus florida (flowering dogwood)
Pathway
cflo03013
Nucleocytoplasmic transport
cflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132295520
09122 Translation
03013 Nucleocytoplasmic transport
132295520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cflo03019
]
132295520
03041 Spliceosome [BR:
cflo03041
]
132295520
Messenger RNA biogenesis [BR:
cflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
132295520
Spliceosome [BR:
cflo03041
]
Complex C
Other components
EJC/TREX
132295520
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132295520
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
TPR_MLP1_2
ABPF_N
FapA
LIM_bind
Motif
Other DBs
NCBI-GeneID:
132295520
NCBI-ProteinID:
XP_059649799
LinkDB
All DBs
Position
Unknown
AA seq
1894 aa
AA seq
DB search
MSLPPVECVYVTEDCIREWKNGNLSFKVPNPVPMLRFLYELCWTTVRGELPFQKCKSALD
SVEFLDKASDEEMGSNFADIVAQMAQDLTMPGEYRARLIKLAKWLVESALVQLRNFQERC
EEEFLWESEMIKIKAADLKSKEVRVNTRLLYQQTKFNLLREECEGYAKLVTLLCRGSEAS
TQNASAATVGIIKSLIGQFDLDPNRVFDIVLECFELQPDNDVFLDLIPIFPKSHASQILG
FKFQYYQRMEINCPVPFGLYKLAALLVKEDFIDLDGIYAHLLPKDDEAFEHYNIFSAKRL
DEANKIGKINLAATGKDLMDDEKQGDVTIDLFTALDLETEAVAEQSSELENNQTLGLLTG
FLAVDDWYHAHTLFKRLSPLNPVAHSQICDGLFRLIGKAISSAYKLVRQTHLYPPGAGSD
SMEPSNSLVHRSFIDLPKELFEMLTSAGPYLYRDTSLLQKICRVLRGYYISAFELVNVGE
GAFSPDSDIGGNRNPRLHLKEVRLRIEEALGTCLLPSLQLIPANPAVGQEIWEVMNLLPY
EVRYRLYGEWEKDDERIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPMT
VLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLAQGGREKLKDDGLNLSDW
LQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGNGIELLLLQELIQQMANVQYTENMTE
EQLDAMAGSETLRYQATSFGIARNNKALIKSTNRLRDSLLPKEEPKLALPLLLLIAQHRS
VVVINAHVPHIKVVSEQFDRCHGTLLQYVEFLCSALTPTASYAQLIPHLDDLVHLYHLDP
EVAFLIYRPVMRLFNCQINSEVFWPLDYSESSNSSIAEKESEPTDSFDKLVLDLGSSRKA
IMWSDLLDIVRTMLPSKAWNSLSPDLYATFWGLNLYDLYVPRNRYESEIAKQHAALKALE
ELSDNSNSAITKRKKDKERIQESLDRLTSELQKHEENVASVRRRLAREKDKWLSSCPDTL
KINMEFLQRCIFPRCTFSMPDAVYCAIFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICC
CTEYEVGRLGRFLYETLKIAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYSQFIKV
HWKWSQRITRLLIQCLESAEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSDER
EDLKVLATGVAAALASRKPSWVTEEEFGMGYLELKPAPSLALKSLAGNLVGVQNGSGINV
CHSEPAGGRIVSTGSQHTDSGNAFKDQVLRTKPVDGRLERTESSSLKSDSGHVKLKGSLL
ANGSDLQSSLPSAAVQAGTSKSTENQKQMDESTNRTLDDNVTKVTSKTPSESEARAPVKR
SVPTGSLLKQPKQDISKDESKSGKAVGRTSGSSTSDKELPTHQFEGRQGGTVNVSSAVSS
NGNTTALVKISSQSIKSLDSHSSEPKAESGAAKSSDLRVSAVKDDVIEVSDVQRAPSRSV
HSPRHDNSVTASKSGDKPQKRASPAEELDGVNKRRKGDVESRDLEGEVRFSDRERSVDHR
IIDKHYPIDLEKSGSDEVIISRAIDKPLDRSKDKGSERHDRDYRERLERPEKSRGDDILY
EKSRDRSMERYGRERSTERVLERGADRGFDRLTEKAKDERNKEDRSKLRYNETSSEKSYV
DDRFHGQNLPPPPPLPPHVVPQSVNASRRDEDSDRRFGTARHTQRLSPRHEDRERRRSEE
NTLVSQDDAKRRREDDFRDRKREEREGLSMKGEEREREREREKANLLKEDMDPGAKRRKL
KREHMASEAGEYLPAAPPAPPLTINMSQPYDGRERGDRKAAMVQRPGYLEEAGPRIHGKE
ATSKITRRETDQIYDREWEDEKRQRAEPKRRHRK
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttccgcctgttgagtgtgtatacgtcacagaggactgtattcgagaatggaag
aatggaaaccttagcttcaaggttccgaacccggtcccaatgctacgttttctctacgag
ctttgttggactacggttcgaggtgaattgccatttcagaagtgtaaatcggcgttggat
tcggttgagtttttggataaagcttcagatgaagagatgggttcgaatttcgctgatatt
gttgcccagatggctcaagatcttacaatgcctggggagtatcgtgctcgtctaattaaa
ttggcaaagtggctggttgaatctgcgctggtccaactgaggaattttcaggagcgctgt
gaggaagaatttttgtgggagtctgaaatgatcaagataaaggctgcagatttgaagtca
aaagaggtcagggtcaacactcgtcttctttatcagcaaacaaaatttaaccttctccga
gaagagtgtgagggctatgcaaagctggttacccttctttgtcggggttctgaagcttca
actcaaaatgcatcagcggcaacagttggcattattaagtcattaattggacagtttgat
ctggatccgaaccgcgtgtttgatattgttttggagtgttttgaacttcaaccagataac
gatgtcttcttggacctgattcccatttttcctaagtctcatgcttcacaaattcttggc
ttcaagtttcaatactatcagcgtatggaaatcaactgtccagtaccatttgggctctat
aagcttgcagctttgcttgtgaaggaagacttcattgatcttgatggcatatatgcacat
ttacttcccaaggatgatgaggcatttgagcattataatattttttctgctaaacgactt
gatgaggctaataaaattggcaaaataaatcttgctgctactggaaaggatcttatggat
gatgagaagcaaggagatgtgacaatagatctttttactgctttggacttggaaactgaa
gcagttgctgaacagtcttcggagctcgaaaataatcaaactttgggcttgcttactgga
tttcttgcagtggatgactggtatcatgcccatacactatttaagcggctctcacctctt
aatccagtggcgcatagtcaaatttgtgatggattgttcaggctcattggaaaagcaatc
tcttcagcttataaacttgttcgtcaaacacatctatatcctccgggagctggtagtgat
tcgatggagccatcaaattcattagttcatagatcttttattgatcttcccaaagagctt
tttgagatgcttacatctgctggaccttatctttatcgtgacacttcattgctgcagaag
atttgtagagtattacgtggctactacatttctgcatttgagcttgtcaatgtgggtgaa
ggagcttttagtcctgacagtgacattggtggaaatcgaaatcctcgtctgcacctaaaa
gaagttaggttaaggattgaggaagctctaggaacatgtctacttccttctttacagtta
atacctgcaaatccggcagttgggcaggagatttgggaagtgatgaatctccttccatat
gaggtgcgctatcgtttatatggtgaatgggaaaaagatgatgagcgcattccaatggtt
ttggctgcaaggcaaacagcaaagttagacactagaaggatcttgaaaaggctagctaaa
gaaaatctgaagcagctgggtcgaatggttgcaaaactagctcatgccaatccaatgact
gttcttcggacgattgtccatcagatagaggcgtacagagatatgattactccggttgta
gatgcattcaagtatttgacacagctcgagtatgatattttggagtatgttgtgattgag
cgcttggcacaaggtgggcgtgagaagctaaaagatgatggccttaatttgtcagattgg
cttcaatctttggcttcattttggggtcacttgtgtaagaaatacccatcgatggaactg
aggggtcttttccagtatcttgtgaatcagttgaaaaaggggaatggaattgagcttctt
ctcctgcaggagcttatccagcaaatggcaaatgtccaatatacagagaacatgactgag
gaacagttggatgccatggctgggagtgagactctccggtatcaggctacttcttttggg
atagcaagaaacaacaaggcgttgatcaaatccactaacaggctaagggattcattactt
ccgaaggaagaaccaaagttggcacttccccttctgttgcttattgctcagcatcgttct
gtggttgtcataaacgcacatgtgcctcacattaaggtggttagtgagcagtttgataga
tgccatggaacccttcttcagtatgtggagttcctttgtagtgcattaacaccgacagcc
tcttatgcacagctaattccccatcttgatgatcttgtacatctgtaccaccttgatcct
gaggtggcctttctgatttatcgacctgtaatgaggctgttcaattgtcagattaattct
gaggtcttctggcctttagattacagtgaatcttcaaattcctcaattgcagaaaaggag
tctgaacctacagattcatttgacaaattggttctggatctcggatcttctcggaaggct
attatgtggtcagatcttcttgatattgttagaacaatgttgccttcaaaagcatggaat
agcctctctcctgatttatatgctactttttggggtctcaatctctatgatctttatgtt
cctagaaaccgctacgagtctgaaattgccaagcagcatgccgctctgaaagccctggaa
gaactttctgataattcaaattcggcaataactaagaggaagaaagacaaggaaagaatt
caagaatctctagatcgtcttactagtgagcttcagaagcatgaagaaaatgttgcatct
gttcgtagacggcttgctcgtgaaaaggataaatggttgagttcctgccctgatacttta
aagattaacatggagtttcttcagcgctgtatttttccacgctgtactttcagtatgcca
gatgctgtttattgtgccatttttgtacatactctccattctttaggaacaccatttttt
aatactgtgaaccacattgatgttctgatatgtaaaaccttgcaacctatgatatgctgc
tgcaccgagtatgaagtgggtcgacttgggaggtttttatatgagacgttgaagattgca
taccattggaagagtgatgaatcaatatatgaacgtgagtgtggaaacatgccaggcttt
gcggtctattatagatatccaaacagtcagcgtgttacatatagccagtttattaaggta
cactggaaatggagtcaaaggatcacgaggttactcattcagtgcttggaatcagctgaa
tacatggaaattcgaaatgcacttataatgttgacaaaaatttctagtgttttcccagta
actcgaaagtctgggatcaaccttgaaaaacgggtagctaaaattaaaagtgatgaaagg
gaggatctcaaggtgttggcaacaggagttgctgcagctttggcatctagaaagccttca
tgggttactgaagaagaattcggcatgggctatcttgaactaaagcctgcaccatcgctt
gctttaaagtctctagctggtaatttagttggtgtgcaaaatggttctggcattaatgtt
tgtcacagtgaacctgccggaggaagaattgtttctacaggaagccaacatacagattct
ggaaatgcttttaaagaccaggtgttgcgaacaaagcctgtggatgggaggttggaaaga
acagaaagttcttcactgaaatctgattccggacatgtaaaactaaaaggtagcttgtta
gcaaatgggtcagatcttcagtcatccttaccctctgctgctgtacaagctgggacatcc
aaatcaacagaaaatcagaagcagatggatgaatccacaaatagaacattggatgacaat
gtcacaaaagttacgtcaaaaacaccctcagaatctgaggcgagagctccagtaaaacgg
tcagtgcctactggatctcttttgaagcaaccaaaacaagatatttcaaaagatgaaagt
aaaagtggaaaagccgttggaagaacatcaggttcttccaccagtgataaagaacttcct
actcatcaatttgaaggcaggcaaggtggaactgttaatgtttcttctgcagtttcatcc
aatggtaatactacagctttggttaaaatctcaagtcaatctataaaatcattagatagt
catagcagtgaaccgaaggcagagagtggagctgcaaaatcttctgatttgagagtgtct
gctgtaaaagatgatgtcattgaggtttctgatgtacaaagagctccttctcgatcagtt
cattctcctagacatgacaactctgttacagcttctaaatctggcgataagccacaaaag
agagccagccctgctgaagaattggatggagtaaataaacgtcggaaaggggatgttgag
tcaagagatttagagggtgaagtgcgattctctgatagagaaaggtctgtagatcaccga
ataatagacaaacattatcctattgatcttgaaaaatcagggtctgatgaggtaattatc
agtagggcaatagataagcctctggataggtcaaaagataagggcagtgaaagacatgac
agggactacagggaaagattggaacgtcctgaaaagtctcgtggagatgatattctatat
gaaaaatccagggataggtcaatggaaaggtatggaagagagcgctcaacagaaagagtg
ctagagagaggtgctgatagggggtttgataggcttacagaaaaagctaaggatgaaagg
aacaaagaagacagaagtaaattgcgttataatgaaacatcttcggaaaaatcttatgtt
gatgatagattccatgggcaaaacttgcctccaccaccgccattacctcctcatgtggtc
ccccaatcagttaatgccagtagaagagatgaagattctgatagaaggtttggaactgcc
agacatactcaaagactttccccaaggcatgaagatagagagcggagacgatctgaggag
aataccttagtttctcaggatgatgcaaaacgcagaagagaagatgattttcgagataga
aagagggaagaaagagaggggctgtcaatgaagggggaggagagggagagggagagggag
agagagaaagcaaaccttttgaaggaggatatggatccaggtgctaagaggcggaaactc
aaaagggagcatatggcatcagaagctggtgagtacttacctgcagctccaccagctcct
ccccttaccattaatatgtcacaaccatatgatggaagagaaaggggtgaccggaaggcg
gccatggtccagcgtccaggttacttggaggaagcaggtcccaggatacatggtaaagaa
gcaactagcaagataacccgtcgtgagacagaccagatatatgacagagaatgggaggat
gagaaaaggcagagagctgaaccaaagaggaggcaccggaaatag
DBGET
integrated database retrieval system
