Cornus florida (flowering dogwood): 132296687
Help
Entry
132296687 CDS
T11641
Name
(RefSeq) DNA-directed RNA polymerase subunit beta''-like
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cflo Cornus florida (flowering dogwood)
Pathway
cflo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cflo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
132296687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cflo03021
]
132296687
03400 DNA repair and recombination proteins [BR:
cflo03400
]
132296687
Enzymes [BR:
cflo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
132296687
Transcription machinery [BR:
cflo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
132296687
DNA repair and recombination proteins [BR:
cflo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
132296687
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribosomal_S2
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Motif
Other DBs
NCBI-GeneID:
132296687
NCBI-ProteinID:
XP_059650844
LinkDB
All DBs
Position
Unknown
AA seq
1560 aa
AA seq
DB search
MEVLMAERANLVYHNKAIDGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSIS
LGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWYATSEYLRQEMN
PNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLT
EYIISCYGARKGVVDTAVRTLDAGYLTRRLVEVVQHIVVRRTDCGTVRGISVSPQNGMIP
ERIFIQTLIGRVLADDIYMGPRCIATRNQDIGIGLINRFITFRAQPISIRTPFTCRSTSW
ICRLCYGRSPTHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEHVRAPS
NGKIKFNEDLVHPTRTRHGHPAFLCSIDLYVTIESEDIIHNVNIPPQSFLLVQNDQYVES
EQVIAEIRAGTSTLNFKERVRKHIYSDSEGEMHWSTDVYHAPEFTYGNVQLLPKTSHLWI
LSGRPCRSSLASLSLHKDQDKMNAHSLSVKRRYISNLSVTNDQARHKFFSSDFSGKQQDR
IPDYSERNRIICTGHCNLTYPAIFHENSDLLAKRRRNRFIIPLQSIQERKKKRIPRSGIS
IEIPINGIFRRNSILAYFDDPRYRRKSSGITKYGTIEAHSIVKKEDLIEYRGVKEFRPKY
QMKVDRFFFIPEEVHILPGSSSIMVRNNSLIGVDTQIAFNTRSRVGGLVRVERKKKRIEL
KIFSGDIHFPGETDKISRHSGILIPPGTGKKNSTESKKLKNWIYVQRITPTKKKYFVLVR
PVVAYEITDGINLATLFPPDLLQERDNVQLRVVNYILYGNGKPIRGIPDTSIQLVRTCLV
LNWGQDKKSSYIDEAHASFVEIRTNGLIQDFLRIDLVKSPISYTSKRNDPSGSGLISENG
SDRTNINPFSSIYSKAKIQQSLNQNQGTIHTLLNRNKECQSLIILSSSNCSQMGPFNDVK
YHNVIKESIKKDPLIRIRNLLGPLGTALPIYNFDSFYHLNLITHNQLLVTNYLQLDNLKQ
AFQVLKYYLMDENGKIYNPDPCSNIFLNPLNLNWYFLHHNYCEETSTIISLGQFICENVC
IAKNGPHLKSGQVLIVQIDSLVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKSR
SGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNECITRILGIPWGFLIGAELTIAQSR
ISLVNKIQRVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERMG
RALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL
GGRIPVGTGFKGLVEEMMESGVHFGHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSE
ACDLVFDAASKGKQFLIVGTKTKAADSVARAALKARCHYVNKKWLGGMLTNWATTETRLH
KFRDLRTEQKTGKLNRLPKRDTAMLKRQLSHLQTYLGGIKYMTGVPDIVIIVDQHEEYTA
LRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIRNS
NT seq
4683 nt
NT seq
+upstream
nt +downstream
nt
atggaggtacttatggcagaacgggccaatctggtctatcacaataaagcgatagacgga
actgccatgaaacgacttattagtagattaatagatcacttcggaatggcatatacatca
cacatcctagatcaagtaaagactctgggttttcagcaagccaccgctacatccatttca
ttaggaattgatgatcttttaacaataccttctaagggatggctagttcaagatgctgaa
caacaaagtttgattttggaaaaacaccatcattatgggaatgtacacgcggtagaaaaa
ttacgtcaatccattgagatatggtatgctacaagtgaatatttgagacaagaaatgaat
cccaattttaggatgactgacccttttaatccagtccatataatgtctttttcgggagct
agaggaaatgcatctcaggtacatcaattagtaggtatgaggggattaatgtcggatccc
caaggacaaatgattgatttacctattcaaagtaatttacgtgaaggactctctttaaca
gaatatatcatttcttgctacggagcccgcaaaggagttgtggatactgctgtacgaaca
ttagatgctggatatctcacgcgcaggcttgttgaggtagttcaacacattgttgtacgt
cgaacagattgtggcaccgttcgaggtatttctgtgagtcctcaaaatgggatgataccg
gaaagaatttttatccaaacattgattggtcgtgtattagcggacgatatatatatgggt
ccacgatgcattgccactagaaatcaagatattggaattggacttatcaatagattcata
acctttcgagcacaaccaatatctattcgaactcccttcacttgtaggagtacatcttgg
atctgtcgattatgttatggccggagtcctactcacggcgacctggtcgaattgggggaa
gctgtaggtattattgcgggtcaatctattggagaaccgggtactcaattaacattaaga
acttttcatactggcggagtattcacagggggtactgcagaacatgtacgagccccttct
aatggaaaaataaaattcaatgaggatttggttcatccgacacgtacacgtcacggacat
ccggcttttctatgttctatagacttgtatgtaactattgagagtgaagatattatacat
aatgtgaatattccaccccaaagttttcttttagttcaaaatgatcaatatgtagaatca
gaacaagtgattgctgagattcgcgcaggaacatccactttgaattttaaagagagggtt
cgaaaacatatttattctgactcagagggagaaatgcactggagtaccgatgtgtatcat
gcacctgaatttacatatggtaatgttcagctcttaccaaaaacaagtcatttatggata
ttatctgggaggccatgcaggtccagtctagcctccctttcgctccacaaggatcaagat
aaaatgaacgcccattctctttctgtcaagcgaagatatatttctaacctctcagtgact
aatgatcaagcgagacacaaattctttagttcggatttttctggtaaacaacaagataga
attcctgattattcagaacgtaatcgaatcatatgtactggtcattgtaatctcacatat
cctgccattttccacgagaattcggatttattggcaaagaggcgaagaaatagattcatc
attccactccaatcgattcaggaacgcaagaaaaaacgaataccccgttcaggtatctcg
attgaaatacccataaatggcattttccgtagaaatagtattcttgcttatttcgatgat
cctcgatacagaagaaaaagttcgggaattactaaatatgggactatagaagcgcattca
atcgtcaaaaaagaagatttgattgagtatcggggagtcaaggaatttaggccaaaatac
caaatgaaagtagatcgattttttttcattcccgaggaagtgcatatcttacccggatct
tcttccataatggtacgaaacaatagtctcattggggtagatacacaaatcgctttcaat
acaagaagccgagtaggcgggttggtgcgagtggagagaaaaaaaaaaagaattgaactt
aaaatcttttctggagatatccattttccgggagagacagataagatatcccgacacagc
ggcatcttgataccaccaggaacgggaaaaaaaaattccacggaatcaaaaaaattgaaa
aattggatctatgtccaacggatcacacctaccaagaaaaaatattttgttttggttcga
cctgtagtcgcatatgaaataacggacggtataaatttagcaacacttttccccccggat
ctgttgcaggaaagggataatgtgcaacttcgagttgtcaattatatcctttatggaaat
ggcaaaccaattcggggaattcctgacacaagtattcaattagttcggacttgtttagtg
ttgaattggggccaagacaaaaaaagttcttatatcgacgaggcccatgcttcttttgtt
gaaataaggacaaatggtttgattcaagatttcctaagaatcgacttagtgaagtcccct
atttcgtataccagcaaaaggaatgatccatcaggttcaggattgatctctgaaaatgga
tcggatcgcaccaatatcaatccgttttcttccatttattccaaggcaaagattcaacaa
tcccttaaccaaaatcaaggaactatccatacgttgttgaatagaaataaagaatgccaa
tctttgataattttgtcatcatccaattgttctcaaatgggtccattcaacgatgtaaaa
tatcacaatgtgataaaagaatcaattaaaaaagatcctctaattcgaattaggaatttg
ttgggtcctttaggaacagctcttccaatttataattttgattcattttaccatttaaat
ttaataactcataatcaactcttggtaactaactatttgcaacttgacaatttaaaacag
gcttttcaagtacttaaatattatttaatggatgaaaatgggaaaatttataatcccgat
ccctgcagtaatatctttttgaatccattaaatttgaattggtattttctccatcacaat
tattgtgaagagacatctacaataattagtcttggacagtttatttgcgaaaatgtatgt
atagccaaaaacggaccacacctaaaatcgggtcaagttctaattgttcaaattgactct
ttagtaatacgatcagctaagccttatttggctaccccaggagcaactgttcatggccat
tatggtgaaaccctttacgaaggagatacactagttacatttatatatgaaaaatcgaga
tctggtgatataacgcagggtcttccaaaagtagaacaggtgttagaagtacgttcgatt
gattcaatatcgatgaatctagaaaagagggttgagggttggaacgaatgtataacaaga
attcttggaattccttggggattcttgattggtgctgagctaactatagcgcaaagtcgt
atctctttggttaataagatccaaagggtttatcgatcccagggggtgcagatccataat
aggcatatagaaattattgtacgtcaaataacatcaaaagtcttggtttcagaagacgga
atgtctaatgttttttcacccggagaactaattggattgttgcgagcggaacgtatgggg
cgtgctttggaagaagcgatctgttaccgagccatcttgttgggaataacaagagcatct
ctgaatactcaaagtttcatatctgaagcaagttttcaagaaactgctcgagttttagca
aaagccgctctacggggtcgtatcgattggttgaaaggcctgaaagaaaacgttgttctg
ggggggaggatacccgtaggtaccggattcaaaggattagtggaagagatgatggagtcg
ggagttcattttggccatggtactagaaaatggaatcctagaatggcaccttatatctct
gccaagcgtaaaggtattcatattacaaatcttactagaactgctcgttttttatcagaa
gcttgtgatttggtttttgatgcagcaagtaagggaaaacaattcttaattgttggtacc
aaaactaaagcagctgattcagtagcacgggctgcgctaaaggctcggtgtcattatgtt
aataaaaaatggctcggtggtatgttaacaaattgggccactacagaaacgagacttcat
aagttcagggacttgagaacggaacaaaaaacggggaaactcaaccgtcttccgaaaagg
gataccgctatgttgaaaagacaattatctcacttgcaaacgtatctgggcgggattaaa
tatatgacgggggtacccgatattgtaatcattgttgatcagcacgaagaatatacggcc
cttcgagaatgtatcactttgggaattccaacaatttgtttaatcgatacaaattgtgac
ccggatctcgcggatatttcgattccagctaacgacgatgctatagcttcaatccgatta
attcttaacaaattagtattcgcaatttgtgaggggcgttctagctatataaggaattct
tga
DBGET
integrated database retrieval system
