Cornus florida (flowering dogwood): 132304468
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Entry
132304468 CDS
T11641
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
cflo Cornus florida (flowering dogwood)
Pathway
cflo03013
Nucleocytoplasmic transport
cflo03015
mRNA surveillance pathway
cflo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cflo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
132304468
09122 Translation
03013 Nucleocytoplasmic transport
132304468
03015 mRNA surveillance pathway
132304468
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cflo03019
]
132304468
03041 Spliceosome [BR:
cflo03041
]
132304468
Enzymes [BR:
cflo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
132304468
Messenger RNA biogenesis [BR:
cflo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
132304468
Spliceosome [BR:
cflo03041
]
Complex C
Other components
EJC/TREX
132304468
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
132304468
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
132304468
NCBI-ProteinID:
XP_059658133
LinkDB
All DBs
Position
Unknown
AA seq
436 aa
AA seq
DB search
MGETKDTDGYEEELLDYEEEDEKAPDSVTAKVNGESVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPNAGQVAALV
LCHTRELAYQICHEFERFSTYLPDIKVAVYYGGVNIKIHKDLLKNECPHIVVGTPGRILA
LARDKDLALRNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVN
RAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQI
DTSTYSMVPLILEIYV
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaacaaaggacaccgatggttacgaggaagagcttctcgactacgaggaggaa
gatgaaaaagcacccgactccgtcaccgccaaagtcaacggcgaatccgttaaaaagggc
tatgttggaattcacagttctggattcagagatttccttctaaagccggagcttctgcgt
gctattgtggattcgggatttgagcatccttccgaagtgcaacatgaatgtatccctcaa
gctatcttgggaatggatgtcatttgccaagcgaaatctgggatgggtaaaactgctgtt
tttgtcctgtccacattgcagcaaattgagcctaatgcaggtcaagttgctgcacttgtt
ttgtgtcatacaagggaattggcttatcagatctgtcacgagtttgagaggttcagcact
tatttgcctgatatcaaggttgctgtttactatggtggtgtcaatatcaaaattcacaag
gacctactgaagaatgaatgtcctcatattgttgttggaacacctggaaggatccttgca
cttgcaagggataaggaccttgctttaagaaacgtgaggcattttatacttgatgaatgc
gacaagatgcttgagtcacttgacatgaggagagatgtgcaggaaattttcaagatgact
cctcatgataagcaagttatgatgttttcggcaacactcagcaaggagatccgccctgtt
tgcaagaaattcatgcaagatccaatggaaatttatgtggatgatgaggcaaagttgacc
cttcatgggcttgtgcagcactacatcaaattgagtgagctggagaaaaaccgcaaattg
aacgacctcctcgacgcattggacttcaatcaagttgttatctttgtcaaaagtgtgaac
agagcagctgagctgaacaaactacttgtcgagtgtaattttccatctatctgcatccac
tctggcatgtcccaggaagaaaggttgacacgctacaagggtttcaaggaaggtcataag
aggatacttgttgcaacagatttggttggcaggggaattgacattgaacgcgtcaacatt
gtcatcaactatgacatgccagattccgcagatacttacttgcacagggtgggtagagct
ggtaggttcggcaccaaaggacttgcaatcacatttgtatcttctgcctctgactctgat
gttcttaatcaggttcaggagaggtttgaggtggatataaaggagctccctgagcagatt
gatacctctacatatagtatggtcccacttatcctagaaatttatgtttga
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