KEGG   Cornus florida (flowering dogwood): 132313696
Entry
132313696         CDS       T11641                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
cflo  Cornus florida (flowering dogwood)
Pathway
cflo03030  DNA replication
cflo03410  Base excision repair
cflo03420  Nucleotide excision repair
cflo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cflo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    132313696
   03410 Base excision repair
    132313696
   03420 Nucleotide excision repair
    132313696
   03430 Mismatch repair
    132313696
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cflo03032]
    132313696
   03036 Chromosome and associated proteins [BR:cflo03036]
    132313696
   03400 DNA repair and recombination proteins [BR:cflo03400]
    132313696
DNA replication proteins [BR:cflo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    132313696
  DNA Replication Termination Factors
   ELG1-RFC complex
    132313696
Chromosome and associated proteins [BR:cflo03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    132313696
DNA repair and recombination proteins [BR:cflo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     132313696
  Check point factors
   HRAD17(Rad24)-RFC complex
    132313696
SSDB
Motif
Pfam: RFC_C DNA_pol3_delta2 RCF1-5-like_lid AAA Rad17 Sigma54_activ_2 RuvB_N AAA_lid_RFC1 DUF815 AAA_22 nSTAND6 AAA_5 Mg_chelatase AAA_29 ABC_tran RsgA_GTPase nSTAND3 AAA_2 AAA_23 AAA_16 AAA_24 T2SSE TsaE SprT-like
Other DBs
NCBI-GeneID: 132313696
NCBI-ProteinID: XP_059668574
LinkDB
Position
Unknown
AA seq 354 aa
MLWVDKYRPKTLDKVIVHEEVAQNLKKLVTEQDCPHLLFYGPSGSGKKTLIMALLRQMFG
PGAEKVKVENKTWKVDAGTRTLDLELTTLSSTHHVELNPSDAGFQDRYIVQEIIKEMAKN
RPIDTKGKKGFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR
CLNVRVNAPTEEQIVKVLDFIGKKEGLQLPSGFAARIAERSNRSLRRAILSFETCRVQQY
PFTNNQAIPPMDWEEYVSEIASDIMKEQSPKRLFQVRGKIYELLINCIPPEIILKRLLFE
LLKKLDAELKHEVCHWAAYYEHRMRLGQKAIFHIEAFVAKFMSIYKGFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgttgtgggtggacaagtaccgaccaaaaaccctagacaaagtcattgtacacgaagaa
gtggcccaaaacctcaagaaactggtcacggagcaagattgtccgcatctgctgttctat
gggccatctggttccggcaagaaaaccctaattatggccttactcagacagatgtttgga
cctggtgctgagaaggtgaaggtagagaacaagacttggaaagtcgatgctggaactagg
actcttgatctagagcttacaacattatcaagcacccaccatgtggagctgaatcccagc
gatgctggttttcaggacagatatattgttcaagagataattaaagaaatggcaaagaat
agaccaattgacacaaaagggaagaaggggtttaaagtactggtgctcaatgaggttgac
aagctctctagagaagcccagcattctctgcggagaacaatggagaaatatagtgcatca
tgccgtctaattctatgttgcaacagctcttcaaaggttactgaagcagtccgttcacgg
tgtctgaatgtgcgagtaaatgcaccaaccgaagagcagattgttaaggtactggatttc
attggaaagaaagaaggcctgcaacttccatctggatttgctgcccgtatagcagaaaga
tcaaatcgaagtttaaggagagctatattgtcatttgagacttgccgtgttcaacagtat
cctttcactaataaccaagccatacccccaatggattgggaggaatatgtttctgaaata
gcgtccgacataatgaaggagcagagccccaaaaggctgttccaggttcgaggaaagata
tacgagctactcatcaattgcattcctcctgaaattattttgaagaggctgctttttgaa
ctattaaagaaactggatgctgaactaaagcatgaagtttgtcattgggctgcatattat
gaacataggatgcgccttggacagaaagctatctttcacattgaagcatttgtagccaag
ttcatgagcatttacaagggtttcctcattgcaacatttggctaa

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