Chryseobacterium fluminis: ODZ84_10065
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Entry
ODZ84_10065 CDS
T09749
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cflu
Chryseobacterium fluminis
Pathway
cflu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cflu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ODZ84_10065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cflu03019
]
ODZ84_10065
03400 DNA repair and recombination proteins [BR:
cflu03400
]
ODZ84_10065
Enzymes [BR:
cflu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ODZ84_10065
Messenger RNA biogenesis [BR:
cflu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ODZ84_10065
DNA repair and recombination proteins [BR:
cflu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ODZ84_10065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Cas3-like_C_2
LexA_DNA_bind
Cullin_Nedd8
Motif
Other DBs
NCBI-ProteinID:
UZT99876
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All DBs
Position
2206839..2208740
Genome browser
AA seq
633 aa
AA seq
DB search
MISQQDFQELKYKALKYFWGYDHFRDSQEAIIDCVIQDKDTLVLLPTGAGKSLCYQLPAL
LKEGTCLIISPLLALMKDQVNQLKSKGIEAEYLSSELDEYDAETIYGRCKEGLTKMLYIS
PERLTNKQFLLNIEEIQLSFIAVDEAHCISEWGQDFRPSYQNIKDFRTNNPHIPCLALTA
TATPKVLEEIKTKLELKNVTVFQKSFKRENIKIFTEEVSDKFQRIFNILKYTDESGIVYV
RTRKEAELLTEYLHKNQLKHVDFFHAGLTAKEKNIRQHTWNTSNNNVLISTNAFGMGIDK
DNVRFVIHYSPSASIENYYQEIGRSGRDGKKSFAFLLWNQHELQNFDQILKNQIPNKAEF
LKIITYLYSKFQVAEFELPEQVFQLNFNGIQNFTKLSTAKIKNVLNFLHNQEIIYFNDHK
SLSSLQLLMQADEIDQLPQKDAYFIELMLRSISGITTHKVMFSEQQVSNKIGISTHLIKE
RLKELQQKNYLEYVDGALSSIKFLKPRDERVINSSYWKLFEHIQKNKIQKWEEMKFFIED
SKYCKMKLILAYFGEKDSKNCGQCTVCEKNKQSIFGKNISAQLLNALAKRPATIEELSIQ
MSFHSKESILENLIFLLDSGKVKMLNFRTYSLA
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgatttctcagcaggactttcaagagcttaaatataaggccctaaaatacttttggggt
tacgatcatttcagagattcccaggaagccattattgattgtgttattcaggataaagat
acgctcgttcttttgcctacaggcgcaggaaaatccctttgttatcagcttccggcatta
ctgaaagaaggaacatgtcttatcatctcgcctcttctggcattaatgaaagatcaggta
aaccagctaaagtccaaaggaatagaagcagaatatctatcttcagaattagatgaatat
gatgctgagactatctatggccgctgtaaagaaggcttaacaaaaatgctttatatatct
cctgaaagacttaccaacaaacagtttctcctgaatatcgaagaaattcagctctctttt
attgcggtagatgaagcgcactgtatttcagagtggggccaggatttccgccccagttat
cagaacataaaagatttcaggacaaacaatccccatattccgtgtcttgcccttacagca
actgccactccaaaagttctggaagaaataaaaacaaaactggagcttaaaaatgtaacg
gtttttcaaaagagtttcaaaagagaaaatatcaaaatttttacagaagaggtatctgat
aaatttcaacgtatttttaacattctgaaatatactgatgaaagcggaatcgtatatgtg
cgaaccagaaaagaagccgagcttctgaccgaatatctgcataaaaatcaattaaaacat
gttgattttttccatgccggccttactgctaaagaaaaaaatataagacaacatacctgg
aacaccagtaataacaatgtacttatctctacgaatgccttcggaatgggtattgataaa
gataatgtccgttttgtgatccactactctccttctgcatcgatcgaaaattattaccag
gaaatcggaagatcaggaagagacggtaaaaaaagttttgcttttcttttatggaatcag
catgaacttcagaacttcgaccagatcttaaaaaatcagattcccaataaagcggaattt
ttaaaaattatcacctatctctattctaaatttcaggttgccgagtttgaattacctgaa
caggtttttcagctcaattttaacggcatacagaacttcacaaaattatcaacggcaaaa
attaaaaatgtattaaattttctgcataaccaggagattatttattttaacgatcataaa
agcctatcctctcttcagcttctgatgcaggccgatgagatcgatcagctgcctcagaaa
gatgcttattttattgaactgatgcttcgttctatctccggaattacaacacataaagtc
atgttcagcgagcagcaggtcagcaacaaaatcggaataagcacccatttgataaaggag
aggctaaaagagttacagcaaaaaaattatcttgaatatgtagatggggccttatccagc
atcaagtttttaaaacccagggacgaaagggtgattaacagctcttactggaagctgttt
gaacatattcagaagaataaaattcagaagtgggaagaaatgaaattcttcattgaagac
agcaagtattgtaaaatgaaattaatccttgcttattttggagagaaagattctaagaac
tgcggtcaatgtacggtttgtgaaaaaaataaacagtctattttcgggaaaaacatttct
gcacagttacttaatgctttagcgaaaagacctgccacgattgaagagttatctatacag
atgagctttcattcaaaagaaagtattttagaaaatctaatattcctcctcgattccggg
aaggtaaaaatgctgaatttcagaacctattccctggcgtaa
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