Chryseobacterium fluminis: ODZ84_15580
Help
Entry
ODZ84_15580 CDS
T09749
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cflu
Chryseobacterium fluminis
Pathway
cflu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cflu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ODZ84_15580 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cflu03400
]
ODZ84_15580 (mfd)
Enzymes [BR:
cflu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ODZ84_15580 (mfd)
DNA repair and recombination proteins [BR:
cflu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ODZ84_15580 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
Choline_kin_N
USH1C_N
Motif
Other DBs
NCBI-ProteinID:
UZT96636
LinkDB
All DBs
Position
3407374..3410745
Genome browser
AA seq
1123 aa
AA seq
DB search
MQLKTISEKFLPELLKKEFGKEIFIQLENNDHVSVKGGAGSSVSIFIAELFLTHKKTILY
IVDDKEDALYANAEMEDLLGKEKVLYFPATHLEPYQVEKTQNANLVLRTEVLNKMNSGKA
AKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYNFQQTDFVSEPGEF
SIRGGIVDVFSYSYEKPYRITFFGNEVENIKTFDIETQLSLDKIKEFQLVSNMNFSVTGS
RVSLLQLLPEDSFVVSRNGIAGMNKMKAFYEKALEKYETLSKDIAHKTPQELFSSDQEFL
FDYKKFKTIDFGSLPIEGIKKLTEIRMDQKVQPSFHKNFELLTEDLEEKQQAGFETWISF
SSDKQKERLESIFEELDREVPFKSFKSELHEGFVDHQHKILVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPDGREVVLSKLGSPTWKSLKQKTKAKVKQIAFDLIRLYAQRKTAKGFA
YTPDSYLQNELEASFIYEDTPDQEKATIDVKKDMESDTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVTVAYVNRFRTAKQKSETLDGLKNG
KVDIIIGTHQLASNTVKFKDLGLLIIDEEHKFGVSVKDKLKTLKSNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLIGFNEEIIRDAVSYELQRDGQVYFINNRVENL
KDIAGLIQRLVPDARVITGHGQMEGKQLERNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMVTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDQEFENLFENEEER
NKLFKSVKEVNIDTDLELMLPDSYISNTEERLLLYQKLAEIDNEQDLEKFESELIDRFGN
LPNEAINLLKSVSLKWLAAEIGFEKIVMKNGVFLGYFPSNPQDKFYQTNKFKHIISYLTQ
NPAEAQLKEKITKDGNHLMMRKDKIINVDEVNYLLKSILKNHV
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaaaccatcagcgaaaagtttcttcccgagttgcttaagaaagaatttgga
aaagaaatttttatccagctcgaaaacaatgaccatgtttctgtaaaaggaggtgccgga
tcttcagtctccatatttatagccgagctttttctcacccataagaaaaccatcctttat
atagtagatgataaggaagatgctctatatgccaatgcagaaatggaagatcttttgggc
aaggaaaaggttttgtattttccggccactcatcttgagccttaccaggttgaaaaaacg
cagaacgccaatctggttctgagaaccgaggttctgaataaaatgaattccggtaaagca
gctaaagtgattgtagcctatgcaggagcgctatccgaaaaagtattaaaaaaagaagat
tttaaagcgatatcgcatcatattaaagtgggcgaccagctggattttgattttgttgat
gaacttctgaatcattacaatttccagcagaccgattttgtttccgaacccggcgagttt
tcgatccggggaggaatcgtcgatgtattttcctattcatacgaaaaaccttaccgtatt
acattttttggaaatgaagttgaaaacattaagacttttgatattgagacccagctttcc
ctggataagataaaagaatttcagctggtttccaatatgaacttttcagtgacaggcagc
cgggtttcattacttcagcttttgcccgaagacagttttgtagtgtccagaaatgggatt
gcaggaatgaataaaatgaaagctttctatgaaaaagcactggaaaaatacgaaaccctg
agcaaagatattgctcataaaacaccccaggaattattcagttccgatcaggaattttta
tttgattataaaaaattcaaaacaatagattttggaagcctcccgatagagggaatcaaa
aaactgactgaaatcaggatggatcagaaggttcagccgtcttttcataaaaatttcgaa
ctgcttaccgaagatcttgaggaaaaacagcaggctggttttgaaacctggatttctttt
tcatcggacaagcagaaagaaaggctggaatctatttttgaagagctggatcgtgaagtc
ccttttaaaagttttaaatctgaacttcatgaaggttttgtagatcatcagcataaaatc
ctggtttataccgatcaccagatctttgaccgctaccagcgctataaagcgaaaaatact
tttgcaaaatccgaacaactcaccctgaaagatctgatgtccctgaaaatcggtgactat
attgcccatatcgaccatggaatcggaaaatttatgggattggtaaaggtgaataatgac
ggaaaaattcaggaatgttttaaactgacctataaaaatggagatctgctgtatgtaagt
atccattctcttcataaaatttcgaaatacaatggcccggatgggcgggaagtggttttg
agtaagctgggatcgccgacatggaaatctctgaaacaaaaaaccaaggcaaaagtaaag
cagattgcttttgacctgataagattatatgcccagcgaaaaacagcaaaaggttttgcg
tataccccggattcttatctgcagaacgaactggaggcaagcttcatctatgaagatact
ccggatcaggaaaaagcaacgatcgatgtgaaaaaagacatggaatctgatacggtaatg
gaccggttggtttgtggagatgtaggtttcggaaaaaccgaggtagcgatccgcgcagcc
tttaaagccgctaccgacgggaaacaggtcgcggttctggttcccaccactattctggcg
tttcagcattacagaagctttaaggaaaggcttaaagatttcccggtgactgttgcctat
gtcaaccgtttcagaactgccaaacaaaagtctgaaaccctggacgggcttaaaaacggg
aaagtggatattatcatcgggactcaccagctggccagtaataccgtaaagttcaaggat
ctgggattgcttatcattgatgaagaacataaattcggggtgtctgtaaaagataagctg
aagacattaaaaagcaatgtcgatactttgacattaacagccacgcccattccgcgtaca
ttgcagttttctctgatggctgcccgtgatttatcagtcattaaaacaccgccgcccaac
aggcagcctgtagatacccagttaattggttttaacgaagagattatccgtgatgctgtt
tcttacgaactccagcgtgacgggcaggtctattttatcaacaacagggttgaaaatctg
aaagatatcgccggactgatccagagactggttcctgatgcaagagtaattaccgggcat
ggacagatggaaggcaagcagctggaaagaaacgtcctggattttatggaaggtaaatat
gatgttctggtttctaccaccattgtagaaagtggggtagacgtgccgaatgcaaacacc
attttcattaatgatgcccaaagattcggaatggcagatctgcaccagatgagaggaaga
gtagggcgaagcaacaggaaagccttctgttacctgatcacgccgccttacgatatggtg
acttcggatgcgagaaaacgtctggaagctatcgagcagttttcagatctgggcagtggc
tttcagattgccatgaaagatcttgaaattcgtggcgcgggcgatttgctgggagcagag
cagagtggctttatcaatgagatgggatttgaaacttatcagaaattaatgcaggaagca
ctggaagaattaaaagatgaccaggagtttgaaaatttatttgaaaatgaggaagagcgg
aacaagcttttcaaatccgtaaaagaggttaatattgatacggatcttgagctcatgctt
ccggattcttatatctccaatacggaagaaagactgttgctgtatcagaagcttgctgag
attgataatgaacaggatctggaaaaatttgagtcggaattgatcgaccgcttcgggaat
ttacccaatgaagccattaatttattaaaaagtgtttccttaaaatggctggctgcggag
atcggttttgaaaagatcgtcatgaaaaacggagtatttctcggatacttcccaagtaac
ccgcaggacaaattttatcagacaaataagtttaagcacattatcagttacttaacccaa
aaccctgctgaagcgcagctgaaggagaaaataaccaaagatggaaatcaccttatgatg
agaaaagacaagataataaatgtcgatgaggtgaattatcttctgaaatcgatccttaaa
aatcatgtttaa
DBGET
integrated database retrieval system
