Chryseobacterium fluminis: ODZ84_19945
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Entry
ODZ84_19945 CDS
T09749
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cflu
Chryseobacterium fluminis
Pathway
cflu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cflu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ODZ84_19945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cflu03019
]
ODZ84_19945
03009 Ribosome biogenesis [BR:
cflu03009
]
ODZ84_19945
Enzymes [BR:
cflu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ODZ84_19945
Messenger RNA biogenesis [BR:
cflu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ODZ84_19945
Ribosome biogenesis [BR:
cflu03009
]
Prokaryotic type
rRNA helicases
ODZ84_19945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
UZT97428
LinkDB
All DBs
Position
4357733..4359442
Genome browser
AA seq
569 aa
AA seq
DB search
MNLFTETNLSPDILKAIGELGYESPTEIQKQTIPFILSDIRDLIALAQTGTGKTAAFSLP
ILDMIDDTSRKIQFLVLCPTRELCLQITKDIKNYSKYMKDIKTTAVYGGSSIMDQMRSLK
DKPQIIVGTPGRVIDLINRKALDFSAIHWLVLDEADEMLSMGFKDELETILSETPETKQT
FLFSATMSKEVERISKNYLTQPHRISVGSINEVKKNIKHEYYVAGYRQKKEALKRLIDSN
PNQYSIIFCRTRMETQEVADFLMQNGYAADALHGDLSQAQRDTVMKKFRLKNIDILVATD
VAARGLDVNSLTHVIHYSLPDDPEVFVHRSGRTGRAGKDGISISLIKPEESRKLKQIKSV
TKIEINEAKIPTGEEVIKAQVGGVFESLFEVHEDFFEFDDSLIPDLSAFTKEELVHKLLQ
FQLKDLALYYKDRHDLIEQKLSSRDDDYSSRRGDRRDRDRGRDRDRGERGERNDRGRERG
GKPRKKDENMVRFFFNLGKKDQLKKLDVLDIINKATSNTKSKKRAEIGDIEILEKFSFFE
IEKSFKGDLLSNISTMKFRGKDMRAEEAN
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgaatttatttacggaaaccaatttaagtcctgatattcttaaggcaattggcgaactg
ggttacgaaagcccgacagaaatccaaaaacagactatcccttttattctttcagatatt
cgcgacttgatcgcacttgcgcagacggggacaggcaaaacagcagcattttcgcttccg
attttggatatgattgacgatacgagtcgcaaaatccaatttttggtgctttgcccgaca
cgagaattatgtcttcagattacaaaagacataaaaaattattctaaatatatgaaagac
atcaaaacgactgcagtttatggtggaagtagtattatggaccaaatgagatctttgaag
gataaaccacagattattgtgggaactccgggaagagtaatagatcttatcaacagaaaa
gcacttgacttttcggcaattcactggctcgtattagacgaagccgatgaaatgctttca
atgggtttcaaagacgaattggaaacaattctaagcgaaacacctgagacaaaacagact
ttcctgttctcagcgactatgagtaaggaagtagagagaatctctaaaaattatcttaca
caacctcacagaatttctgttggttctattaacgaagttaagaagaacattaagcacgaa
tactatgtagcaggttaccgccagaaaaaagaagcccttaaaagattaattgattcaaac
ccgaatcagtactcgattatcttctgcagaaccagaatggaaactcaggaagttgctgat
ttcctgatgcagaatggctatgctgctgacgcgcttcatggtgatctttctcaggctcag
agagacacggtaatgaaaaaattcagattaaagaacatcgatatcttggtagcgacagac
gttgcagccagaggactggatgtaaattcactgactcacgttatccattattctttacct
gatgatccggaagtattcgttcacagaagcggaagaaccggtagagccggaaaagacggt
atttcgatttctttaattaagcctgaagaaagcagaaaattaaagcaaatcaaatcggtt
accaaaattgagattaatgaagctaaaatcccgacaggagaagaagtgattaaagctcag
gtaggcggtgttttcgaaagtctttttgaagtacacgaagatttctttgaatttgacgat
tctttaattcctgatctgtcagcgtttactaaagaagaattggttcacaaattacttcag
ttccagttgaaagatcttgccctttattataaagacagacacgatcttattgagcagaaa
ctcagcagcagggatgatgactactcatcaagaagaggagacagaagagaccgtgacaga
ggaagagaccgcgacagaggagagagaggagaaagaaatgacagaggaagagagcgtggt
ggaaaaccgagaaaaaaagatgaaaacatggtaagattcttctttaatcttggtaaaaaa
gatcagttgaagaaactggatgtattagacattatcaataaagcaacatccaataccaaa
agcaaaaaaagagctgaaatcggtgatattgaaattttagagaaattctctttcttcgaa
attgaaaaatcattcaaaggagaccttttaagcaacatctcaacgatgaaattcagaggt
aaagatatgcgagctgaagaagcgaactaa
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