Chryseobacterium fluminis: ODZ84_19990
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Entry
ODZ84_19990 CDS
T09749
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cflu
Chryseobacterium fluminis
Pathway
cflu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cflu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ODZ84_19990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cflu03019
]
ODZ84_19990
Enzymes [BR:
cflu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ODZ84_19990
Messenger RNA biogenesis [BR:
cflu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ODZ84_19990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
UvrD-helicase
Cas3-like_C_2
HEM4
Phage_integrase
Flavi_DEAD
P-loop_SecA
DUF5612
Motif
Other DBs
NCBI-ProteinID:
UZT97436
LinkDB
All DBs
Position
complement(4366781..4368085)
Genome browser
AA seq
434 aa
AA seq
DB search
MNFTDLQLIDPIAKAIEEQGYTNPTPIQERSIPEILNGRDFLGCAQTGTGKTAAFSIPIL
QNLAKNKTPNKNIKALILTPTRELAIQIEENINNYGKYLPLKQLVIFGGVKQGNQEAALR
KGVDILVATPGRLLDFIAQGIISLKNIEIFVLDEADRMLDMGFVHDVKRVIKLLPQRRQT
LFFSATMPSEIQKLADSILNNPVKVEVTPVSSTADTIKQSVYFVEKENKLNLLAHILKND
ISDSVLVFSRTKHGADKIARKLQGDQITTEAIHGNKSQNARQNALNNFKSGKTRVLVATD
IAARGIDIDELKYVINFELSDVSETYVHRIGRTGRAGAEGSSISFVDGLDLLNLKNTEKL
IGKKIPVVKNHPFHTDNLVAQKRDSNNKPTAPGSGRPRTSSPAGSANSKDKKKPSATAAV
GYKKPKNKSFFRKK
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttacagacttacaattaatagatcctattgcaaaagcaattgaagaacaagga
tataccaacccaacccctattcaggagagatcaattcctgaaattttaaacggtcgtgac
tttttgggttgcgcgcagacaggaaccggaaaaacagcggctttctccatccccatttta
cagaatcttgctaaaaataaaacgcccaataaaaatattaaagccttaatattaactccc
acaagagagttggcgattcagattgaagaaaatatcaataattacgggaaatatttacca
ttaaaacaattggttattttcggaggcgtcaaacagggaaatcaggaagcagccttaaga
aaaggtgttgatattctggttgccactccgggaagactgcttgattttattgctcaggga
attatcagcttaaaaaatattgaaatatttgtacttgatgaagccgacagaatgctggat
atgggttttgtgcatgatgtgaagagagtcatcaagcttttgccacagagaagacagact
ttatttttctccgcaaccatgccttcagagattcagaaactggctgattctatcttaaat
aatcctgtaaaagtagaagtaactccggtttcttccacagcagacaccatcaagcaatct
gtttatttcgttgaaaaagagaataaattaaaccttctggctcacattcttaaaaatgat
atttcagattctgttctggtgttttcaagaacgaaacacggtgctgataaaatcgccaga
aaacttcagggcgatcagatcaccacagaagctattcacggaaataaatcccagaatgca
agacaaaatgcactgaacaattttaaatccggaaaaacgagagttctggtcgccacagac
atcgctgcaagaggaattgatatcgacgaattgaaatacgtcatcaattttgaactttct
gatgtttccgaaacgtatgttcacagaatcggaagaacaggacgagcgggtgccgaagga
agctccatttcttttgtagacggacttgatttactgaatctgaagaatacggaaaagctg
atcggtaaaaaaattccggtagtcaaaaaccatccgtttcatacagataatttagttgct
cagaaaagagattctaataataaaccgactgctccaggtagcggaaggccaagaacatca
agccctgcgggatccgccaattcgaaagataaaaagaagccttctgcaacagctgctgta
ggatataaaaagccgaaaaacaagagctttttcagaaaaaagtaa
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