Chryseobacterium fluminis: ODZ84_21000
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Entry
ODZ84_21000 CDS
T09749
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cflu
Chryseobacterium fluminis
Pathway
cflu03030
DNA replication
cflu03430
Mismatch repair
cflu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cflu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ODZ84_21000 (dnaE)
03430 Mismatch repair
ODZ84_21000 (dnaE)
03440 Homologous recombination
ODZ84_21000 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cflu03032
]
ODZ84_21000 (dnaE)
03400 DNA repair and recombination proteins [BR:
cflu03400
]
ODZ84_21000 (dnaE)
Enzymes [BR:
cflu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ODZ84_21000 (dnaE)
DNA replication proteins [BR:
cflu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ODZ84_21000 (dnaE)
DNA repair and recombination proteins [BR:
cflu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ODZ84_21000 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
DUF2857
Motif
Other DBs
NCBI-ProteinID:
UZT97623
LinkDB
All DBs
Position
4585789..4590456
Genome browser
AA seq
1555 aa
AA seq
DB search
MYLVFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHNDDGTLIENQDYIIKPEGYDIPF
NAARIHGITTKIANEEGRDLEEILKEFSEVLEKVRVVSGHNVEFDYNIVGAEFYRKNIED
NLQKKPRADTMILGTDFCQLGGGRGGRFKPPKLEELYEKLYGHKFDEAHNAAADVNATAQ
VFFEMMRIGIIPAEVLKTSEDQLAYFKTLYPDPIKPFSIVIRRQVADFNNKKKQQDFGSI
DEIDLGRYFNFDNHSVFSTLSATSSIGDLIKKATDDNFPAVGMVDLGNMMGAFKFVSAVE
GTNSDRAKKHKEYLAKKQEAEENGTQFNEEEPVSEPLIPVVGCEFYISDRYEQKQFTKDD
PDRRTQVVLLAKDFNGYKNLAKLSSIGFLKGFYFGVPRISREVIAEYKEGLIALTSGIMG
DIPDAILNTGEQKGEELFKWWKDTFQDDFYVQIQNHKLPEEEHLNDVLLHFADKYNVKIL
AQNETFYTNKDDSNIQDIVSCIKDGEKLTTPVGKGFGKRRGLATGEYFIKNSDEIKEAFL
AYPDAFDAYEEFTAKFKPYTLKRDVLLPKFDIPEEFIHAEDEIDGGKRGEMAYLTHLTYE
GAKKRYVDTGITDEIKERLDFELDVIANTGYPGYFLIVQDFCNEARNMGVWVGPGRGSAA
GSAVAYAIGITNVDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRDKIIKWVVDKYGKNQ
VAQIITYSVLGGKSAIKDAGRVLDVPIPDTNNIAKLIPASPGMNIAKALAKYDKLKPEEQ
MLVDEMRYVLSSPDDARHGVLASAKKMEGCIRNTGIHACGVIITPEDVSNLVPVTIAAKD
ADILVSQFDNSVAESAGLLKMDFLGLRTLTIIKDALKLVKARHGVDIDPDLIPLDDVKTY
QLFKEGRTVGIFQYESPGMQKYMRELKPTVFADLIAMNALYRPGPIKYIPNFINRKHGIE
EIIYDLPETEEYLKETYGITVYQEQVMLLSQKLANFTKGEADTLRKAMGKKQIDVLNKMY
PKFIEGGRKNNLNEERLEKIWNDWKAFAEYAFNKSHSTCYALIAYQTAYLKANYPAEYMA
SVMSNNINNTDSITMFMEDCKSIGVDVLGPDVNESQYKFSVNEKGQIRFGLGAIKGIGEG
PSEAITRERANGRFKNIYDFFERILPSQMNKRVAESLVLAGAFDELDSFHRGQYFDVDMA
GRTNLERLIRYGQSFQESKNEMEFSLFADFADEVQIEQPKLAPCPEWPNMHKLNKEKEII
GFYLSAHPLDEFKYQFEFIAGNLSKKSVLEKEDDEKIVTDEVPVLEKDSVDDVAELIEIV
SDDLVAGEEEIIEEVIKKAEPKGNFMFLNLDEVDAYKEQAFSNKQEELFEEKKKDWKTLQ
KERENGGAGKEYTVAGLITEYVVKDGFRSGEKVAFVTLEDYSGSYSFRLGDRDYMKLKEK
LEVQRFVIFKIKFAQVKDGRVFVNVNDVIELQEAFEKFAKSISLVMDVMDVRPEDLSFFR
RVLERNQGNQKLKFFIKNIEDDSHIEVQSMKHSVNLSGDLIKQIQLLNKYEFYLN
NT seq
4668 nt
NT seq
+upstream
nt +downstream
nt
atgtatttagtttttgacactgaaaccacaggtttaccaaaaaatttcaacgctcctctt
tcagattcagacaactggccaagaatggttcagattgcatggcagttacataatgatgat
gggacgcttattgaaaatcaggattatattataaaacctgaaggatatgatattcctttt
aacgcagccagaattcacggaattacaacgaaaatcgccaatgaagaaggtcgtgatctg
gaagagattttaaaagagttttctgaagtcctggaaaaagtaagggtagtatcgggacat
aatgttgagtttgattataatattgtaggggctgaattttacagaaaaaatatagaagac
aaccttcagaagaaaccacgggccgatacgatgattctgggtaccgatttctgccagctt
ggaggaggtcgtggaggaagattcaaaccaccgaagctggaagaactctacgaaaaatta
tacggtcataagtttgatgaagctcataatgcagcagcggacgtaaatgcgactgctcag
gtttttttcgaaatgatgagaatcgggatcatccctgctgaggtactgaaaacgtctgaa
gatcagcttgcatacttcaaaacactgtatccggatcctattaagcctttcagtattgtg
atcagaaggcaggttgcggactttaacaataagaaaaaacaacaggatttcggaagtatt
gacgagattgatctcggaaggtatttcaattttgataatcacagtgtgttttctactttg
tctgctacttcgagtatcggcgatctgatcaaaaaagcgacggacgataattttcctgcc
gtcggtatggtggatctgggaaatatgatgggcgcttttaaatttgtttccgcagtagaa
ggaacgaatagcgaccgggcaaaaaagcataaggaatatcttgccaagaaacaggaagcg
gaagaaaacgggacccaattcaatgaagaagaacctgtttccgaacctttgattcccgtt
gtcggatgtgagttttatatttcagaccgctacgagcaaaaacagtttaccaaagatgat
cccgacagaagaacacaggtagttctcttggcaaaagattttaacggttataaaaacctg
gcgaaactgtcaagtattggctttttaaaaggattctattttggggttccgaggatcagc
cgtgaggtcattgctgaatataaagaaggactgattgcgctgacttcaggtattatgggg
gatattcccgatgcgattttaaataccggggaacaaaaaggggaggagcttttcaagtgg
tggaaagatacatttcaggatgatttttacgttcagattcaaaaccataaactacctgag
gaagagcatttgaatgatgtcctgcttcattttgcagataaatataatgttaaaatatta
gcccagaacgaaactttttataccaacaaggacgattccaatattcaggatattgtaagc
tgcatcaaagatggcgaaaaactgacgacacctgtgggaaaaggattcgggaaaagacga
ggtttggctaccggagaatatttcatcaaaaattctgatgaaatcaaggaagcctttctg
gcatatccggacgcttttgatgcctatgaggagtttacggccaaatttaaaccttataca
cttaaaagagatgttcttcttcctaaatttgatatcccggaagaattcattcatgcagaa
gatgaaattgacggcggtaaacgcggagagatggcctaccttactcatttaacctatgag
ggagcgaagaaaagatatgtcgatacgggaattaccgatgaaataaaagagcgtcttgat
ttcgaactggatgttattgccaatacgggatatccgggttacttcctgattgtacaggat
ttttgtaatgaagcccgtaatatgggagtttgggttggccccggacgtggttctgccgca
ggttcggcagtggcctacgcgatcgggattactaacgtggatcctattaaatatgatctc
cttttcgagagatttctgaatcctgaaagggtttcaatgcccgatatcgatattgacttt
gatgacgagggccgtgataagattatcaaatgggttgttgataaatatgggaaaaaccag
gtcgcacagatcatcacctactcggttttgggtgggaaatctgcgattaaagatgcgggg
agagtgctggatgttccgattcctgataccaacaatattgcaaagcttatccctgcgagc
ccggggatgaatattgccaaagctttggcgaaatacgataaactaaagcctgaagaacag
atgctcgttgatgaaatgagatatgttttaagcagtcctgatgatgcccgtcacggtgta
ctggcaagtgccaaaaaaatggagggctgtatccggaatacgggtattcatgcctgtggg
gttattattacgccggaggatgtgagtaacctggttccggtgacgattgctgccaaagat
gcagacattttagtctcgcagtttgataactcggtggcggaaagtgcggggcttctgaaa
atggattttctgggtcttcgaacgcttacgattatcaaagatgctttgaagttggttaag
gccagacatggagttgatatagatccggatctgattcctctggatgatgttaaaacctac
cagttatttaaagaaggtagaacggtcgggattttccagtatgaaagtcctggaatgcag
aaatatatgagagagcttaagccaacggtttttgccgatcttattgccatgaatgctctt
taccgtccgggaccgataaaatatatcccaaatttcattaacaggaagcatgggattgag
gagattatctatgatttacctgaaactgaagaatatttaaaagaaacatacggaattacc
gtttaccaggagcaggtgatgcttctgtcccagaagcttgccaactttactaagggcgaa
gcggatactctgagaaaagcaatgggtaaaaaacagatcgacgttctgaataaaatgtac
ccgaaatttattgagggagggcgcaaaaataatctgaatgaagaaagactggaaaaaatc
tggaatgactggaaagcctttgccgaatatgcctttaataaatctcactctacctgttat
gccctgatcgcttatcagacagcatatctgaaggccaactatccggcagaatacatggcg
agtgttatgagtaataacattaacaatacggattcgattaccatgtttatggaggactgt
aaaagtatcggagtagatgttttaggtccggatgttaacgaatctcaatataaattctcc
gtaaatgagaagggacagatccgtttcggcctgggagcaatcaagggaatcggtgaaggt
ccgagtgaagccattaccagagaaagagccaatggaaggtttaaaaatatttacgatttc
ttcgagaggatcttaccttcccagatgaataaacgtgtagcggaaagtctggtattggcc
ggtgcttttgatgaactggattcttttcaccgtgggcagtattttgatgtggatatggcc
gggagaaccaatctggagagactgataagatatgggcagagttttcaggaaagtaaaaat
gagatggagttttctctttttgccgattttgccgatgaggtgcagatcgagcagcccaag
ttggcaccatgcccggaatggccgaatatgcataagcttaataaggaaaaagaaattata
ggattctatctgtctgctcatccgctggatgaatttaaataccagttcgagtttatcgct
gggaacctgtcgaaaaaatcggtactggaaaaagaggatgatgaaaaaatagtaacggat
gaggttcctgttctcgaaaaagattctgtagatgacgtggctgaacttatagaaatcgtg
tccgatgatctggtcgccggagaggaggaaattatagaagaagtcattaagaaggctgag
ccgaaaggtaactttatgtttttaaatcttgatgaggtagatgcttataaagagcaggct
ttctccaacaaacaggaagaattgtttgaagaaaagaaaaaggactggaaaacattacag
aaagaaagagaaaacggcggggcaggaaaagaatatacagttgccggactgattacggaa
tatgtggtgaaagatggcttcagaagcggtgaaaaggttgcttttgttacactggaggac
tattcgggatcttactcattcaggctgggagaccgggattatatgaaactgaaggaaaag
cttgaagttcagcggtttgttatttttaagataaaatttgcccaggtgaaagacgggcgt
gtttttgtgaatgtgaatgatgtcattgagcttcaggaagcttttgaaaagtttgccaaa
agtatttcgctggtcatggatgtcatggatgtgaggcctgaagatttgtcatttttccgg
agggttttggagagaaatcagggaaatcagaaactgaaattttttattaaaaatattgaa
gatgattctcatatagaagtgcagtcgatgaaacactccgtcaatctgagcggtgatctg
atcaaacagattcaactgctcaataagtatgagttttatctgaattga
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