Clostridium formicaceticum: BJL90_12405
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Entry
BJL90_12405 CDS
T05005
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cfm
Clostridium formicaceticum
Pathway
cfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJL90_12405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfm03019
]
BJL90_12405
03400 DNA repair and recombination proteins [BR:
cfm03400
]
BJL90_12405
Enzymes [BR:
cfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BJL90_12405
Messenger RNA biogenesis [BR:
cfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJL90_12405
DNA repair and recombination proteins [BR:
cfm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BJL90_12405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HTH_40
HRDC
RecQ_Zn_bind
ResIII
UPF0122
Helicase_Sgs1
zf-CXXC
HTH_24
Motif
Other DBs
NCBI-ProteinID:
AOY76592
UniProt:
A0AAC9RJ39
LinkDB
All DBs
Position
2773509..2775665
Genome browser
AA seq
718 aa
AA seq
DB search
MDIYRQLKTYFGYDRFKKGQEKLIAGILKGIDVLGIMPTGGGKSLCYQLPAVTLEGVTIV
VSPLISLMKDQVDALYEMGIKAACINSTLQTSELIEITKEIKANQYKIVFVAPERLNSSS
FMDMIKHIKISLVAIDEAHCISQWGHDFRPSYLEIPRFIGRFRNRPVVAAFTATATKEII
AEIKALIGLQDPLEVTTGFDRPNLFYQVTKAGNKFAYLCDYLENNFQEESGIIYCSTRKT
VEALVKKLKERGISINGYHGGMQTELRQKNQEDFMFNRVRIIVATNAFGMGIDKPDVRFV
IHYNMPKNMEAYYQEAGRGGRDGEESHCILMYSPSDVVKQKLMIANEEIAPEREALQYKN
LQYLIDFCHTNDCLRNKILSYFGEEVISDNCGKCSNCLDQSEMVDITVESQKVLSCIYRV
NQKYGVNTVIQVLRGSKNRRILEQGLNQVSTYNIMKDYSEKAIREIIMTLSAREYIHITT
DKFPVLKLTSKCREVLQGKVKVYHKKDLIENKPSENKKEGLDKRAMDDAFDEELLRKLKE
LRYTIAAEHELPPFMIFHDRTLKEMASCFPQDKEAFLKINGVGEKKFENYGEKFILLIKD
YCIDKKIDTALEENELDQEAAYDRYQLTYHWYLEELSIEKIADKRTLKPATIIQHLKRCQ
ENGLVVDWERFMCDAEKEKVVMEAVKKIGSQRLKPIKDALPEDISYEDIRIVIIKNAL
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggatatatatagacagctaaaaacatattttggctatgataggtttaaaaaaggtcaa
gaaaaattaatcgcaggaatattaaagggaatagatgtattgggaattatgcctacaggt
ggaggtaagtctctttgttatcaacttccggcggtgactttagagggtgttaccatcgtt
gtttcccctcttatatctcttatgaaggatcaagtagatgcgttatatgaaatgggtatt
aaggccgcctgtattaacagtacccttcagaccagcgaattaatagaaattaccaaggaa
ataaaggcaaaccaatataaaatcgtatttgtagcaccagagcggctaaatagcagtagt
tttatggatatgataaagcatataaaaatctctttagtggctattgatgaggcccactgt
attagtcagtggggtcatgactttcgcccaagctatcttgaaattcctagatttattggc
aggtttagaaatagacctgtagtagcggctttcacggcaacagctacaaaggaaattatt
gcagaaataaaagcactaatagggttgcaggatccactagaggttactacaggattcgat
aggcctaatttgttttatcaggtaacgaaagcaggaaataagtttgcttatctatgcgac
tatttagagaataactttcaagaggagtcagggatcatctattgttcaacaagaaaaaca
gttgaggcactggtgaaaaaactaaaggaaagaggaatttctatcaatggttatcacggt
gggatgcaaacggagttacggcagaaaaatcaagaggattttatgtttaacagggttaga
atcattgtagccaccaatgcatttggcatggggatagacaaaccagatgttagatttgta
atacactacaatatgcctaaaaacatggaagcttattatcaagaggcaggcaggggtggt
agagatggagaagaaagccattgtattctaatgtactctccttctgacgttgtaaaacaa
aagctgatgatagccaatgaagaaattgcacctgaacgagaagcattgcagtataaaaat
ctacaatatcttattgatttttgtcataccaatgattgtcttagaaataaaatattaagt
tactttggagaagaggtaattagtgacaattgcggtaaatgtagcaactgtttagatcag
tcggaaatggtagatattaccgttgaatctcaaaaggtgttgtcctgtatctatagagtt
aatcaaaaatatggtgtaaatactgtgattcaggttttgaggggatcaaaaaatagaaga
atcttggaacaaggtttaaatcaagtatccacctataatattatgaaggactatagtgaa
aaagcaattagagaaattattatgactttatctgctagagagtatattcatattacaacg
gataagtttcctgtgttaaaactaacctccaaatgtagggaagtgctgcagggaaaagta
aaggtatatcataaaaaggatttgattgaaaacaaaccatcggagaataaaaaagaggga
ttagataaaagggcaatggatgatgcttttgatgaagaactattgaggaaattaaaggag
ttaaggtatacgatagcggcggaacatgaattacctccctttatgatctttcatgataga
actttgaaggaaatggcatcttgctttcctcaggacaaagaggcttttctgaaaataaat
ggtgtaggagagaaaaagtttgaaaattatggtgagaaatttattcttcttattaaagac
tattgtattgataaaaaaatagatacagctttagaggagaatgaactggatcaagaagca
gcatatgatagatatcaattaacctatcattggtatctagaagaattatctatagagaaa
attgctgataaaagaaccttaaaaccagccaccattattcagcacttgaaaaggtgtcag
gagaatggccttgttgttgattgggaaagatttatgtgtgatgcagaaaaagaaaaagta
gttatggaggcagtgaaaaaaataggttcccaaaggctgaagcctataaaagatgctttg
cctgaggacattagttatgaggatattcgtatagtaattataaaaaatgcactttaa
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