KEGG   Clostridium formicaceticum: BJL90_13035
Entry
BJL90_13035       CDS       T05005                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
cfm  Clostridium formicaceticum
Pathway
cfm03030  DNA replication
cfm03410  Base excision repair
cfm03420  Nucleotide excision repair
cfm03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:cfm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BJL90_13035
   03410 Base excision repair
    BJL90_13035
   03420 Nucleotide excision repair
    BJL90_13035
   03440 Homologous recombination
    BJL90_13035
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cfm03032]
    BJL90_13035
   03400 DNA repair and recombination proteins [BR:cfm03400]
    BJL90_13035
Enzymes [BR:cfm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BJL90_13035
DNA replication proteins [BR:cfm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     BJL90_13035
DNA repair and recombination proteins [BR:cfm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     BJL90_13035
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BJL90_13035
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N 5_3_exonuc DNA_polI_exo1 DNA_pol_A_exo1 HHH_5 HHH_2
Other DBs
NCBI-ProteinID: AOY76710
UniProt: A0AAC9RKS1
LinkDB
Position
2900293..2902983
AA seq 896 aa
MEKERIVIIDGNSLINRAFYALPPLTTKEGQHTNAIYGFMTMLFKVIEEYKPQYIGVAFD
KKAPTFRHKEYGDYKAGRKKMPQELAEQMEPLKEILDVLSIYRIEIEGFEADDLIGTLAK
YCEGKDFESLIVTGDKDALQLASPNTKVLFTKKGISNLEIYDDKKVMEDFQVTPLQFIDL
KGLMGDKSDNIPGVPGIGEKTAVKLIKEFGSVENLVQNTEKISAAKLREKIETNKQQAIL
SKRLATIVTNVPVDIHVDHLKVEAFEKEKVLKIFNKYEFNSLINKLVETHREENTEKNYE
KENGMAIVDIKDLKALNQMLQDIEVSKKIILKSITEEKNIVNNKIIAIGIGIIEGKQYYI
DLRDFENKDKVLQQLKPLLEDETIEKISHDVKKELLHFYPYDIQIKNFIFDTMIGEYLID
PSKSSYSIKELGAQYFGESLLEEEELVGKGKSQIDRADIPREKLKTYLGQQVEVSYRLKD
LLEKKIIELELTALYYEVELPLTEVLASMEFRGIKVDKHMLEDLKIEFKNRVDHLTTEIY
DLAGEVFNINSPKQLGEILFDKLQLPPIKKTKTGYSTNVEVLEKLHDKHDIIPKILEYRQ
VTKLKTTYIDGLLNIINPITGRIHSSFHQTVTTTGRISSTEPNLQNIPIKLEMGRGLRKV
FRAEEGHKLIDADYSQIELRVLAHISEDKNLLESFLQDQDVHTRTASEIFNVPIEEVTSS
MRSSAKAVNFGIVYGISDFGLAENLNISRYHAKKYIDSYLEKYASVQKYMEDAVRTAKER
GYVLTLLNRRRYLPEVHSRNFNLRSFGERVAMNTPIQGSAADIIKIAMVKVYKRLKEGNF
KSKLILQVHDELIVEAMDSELEKVSSIVKESMEEAMTIKVPLKVDLAYGETWYDTK
NT seq 2691 nt   +upstreamnt  +downstreamnt
atggaaaaagagcgtattgttattatagatggaaatagtttaattaatagagccttttat
gctttacctcctttaactacaaaggaaggacaacacaccaatgctatctatggatttatg
acgatgttgtttaaagtcatagaagagtataagccccagtatataggtgtggcttttgat
aaaaaagccccaacatttcgtcataaagaatatggagactataaagcaggaagaaaaaag
atgccgcaggagctggcggagcaaatggaacctctgaaggaaatactagatgttcttagt
atttataggatagagatagaagggttcgaggctgatgacttaattggtactttggcaaag
tattgtgaaggaaaagattttgaaagtcttattgtaacaggggataaggatgcattacaa
cttgcttctcctaatacgaaagttttatttactaaaaaaggtatctctaatttagaaatt
tatgatgataaaaaggtaatggaggactttcaagtaactcccttacaatttatagattta
aagggtttgatgggggataaatcggataatattccaggtgttccaggaataggagaaaaa
acagcggttaaattgattaaagaatttggttccgtagagaatttggtgcaaaataccgaa
aaaatttctgctgcaaagctaagagaaaaaatagagaccaataaacaacaggcgatttta
agtaaaagattagccaccattgtcactaatgtaccagtagatattcatgtagatcattta
aaggtcgaagcatttgaaaaagaaaaggtactgaagatttttaataaatatgagtttaat
agtctaattaataaattggtggagacccatagagaagaaaatacagaaaaaaactatgag
aaagaaaacggtatggctattgtagatataaaagatttgaaagctttaaatcaaatgcta
caagacatagaagtaagcaaaaaaataatattaaaatcaataacagaagaaaaaaatatt
gtcaataacaagatcatcgctatagggataggtattatagaaggtaagcagtattacata
gatttaagggattttgaaaataaggataaggtgttgcaacaattaaagccattattagaa
gatgaaactattgaaaaaataagtcatgatgtaaaaaaagaactactacatttctaccct
tatgatattcaaataaagaactttatctttgataccatgattggagaatatttaatagat
ccttctaagtccagctatagtataaaagagctaggagcacaatattttggagaaagtctg
ctggaggaggaagaattagtaggaaagggtaaaagccaaatagacagagcagatataccc
agagagaagctgaaaacttatttaggacaacaggtggaggtaagctatcgtttaaaagat
cttcttgaaaaaaagataattgaattagaactaactgcattatactatgaggtggaacta
ccgctaacggaagtactagcctctatggaatttagaggaattaaggtagataagcatatg
ttggaagatttaaaaatagaatttaaaaatagagttgatcatctaacgacagaaatttat
gatttagctggggaggtttttaatatcaattctcccaaacaattaggagaaattttattt
gataaattacaattacctcctattaagaaaactaaaacaggttactctactaatgtagag
gttttagaaaaacttcatgataagcatgatattatacctaagatattagagtatagacag
gtaacaaagttgaaaaccacctatattgatgggttgttgaatattattaatcctattaca
ggaagaattcattctagcttccatcagacggttaccactacaggaagaatttctagtaca
gaacctaatttacagaatatacctataaagttagagatgggaagaggtcttagaaaagta
tttagagcagaagaagggcataagcttattgatgccgattattcacagatagaattaagg
gtactggcacatatctctgaggataagaatttattagagtcttttttgcaggatcaagac
gtacacactagaactgcatctgaaatttttaatgtgcctattgaggaggtaacctcttca
atgaggagcagtgcgaaggctgtaaattttggtattgtttatggcataagtgattttgga
ttagcagagaacttaaatatttccagatatcatgcaaaaaagtacatagatagttatctt
gaaaaatatgcttctgttcaaaaatatatggaggatgcagtaagaactgcgaaagaaagg
ggatatgtactgaccctactaaatcgcagaagatatttaccagaggttcattctagaaac
ttcaatcttcgttccttcggtgaaagggtggccatgaatacccctattcaaggaagtgct
gctgatattataaaaatagccatggtgaaggtatacaaaagattaaaggaaggtaacttc
aaatcgaagctgattctacaggtacatgatgaattaattgttgaggctatggatagtgag
ttggaaaaagtatctagcatagtaaaggaatctatggaggaagctatgacgattaaagta
ccattaaaagtagacttagcctatggtgagacatggtacgatacaaagtaa

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