Clostridium formicaceticum: BJL90_17690
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Entry
BJL90_17690 CDS
T05005
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cfm
Clostridium formicaceticum
Pathway
cfm02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cfm00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
BJL90_17690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfm03021
]
BJL90_17690
Transcription machinery [BR:
cfm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
BJL90_17690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r4_2
Exonuc_VII_L
Sp-DndD
Motif
Other DBs
NCBI-ProteinID:
AOY77524
UniProt:
A0AAC9WHV2
LinkDB
All DBs
Position
complement(3781930..3783051)
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AA seq
373 aa
AA seq
DB search
MNNPKEIKDKKESVKKLVEKGKKRGMITYTEIMDALEDIDIDKDQIDEVYEHLATMGIDI
VGDKEDDLDDLEVDDIDLENDIVIEENIEDDSALLKGINIDDPVRMYLKEIGKVPLLSAD
EEIALAQRMEDGDEEAKKRLVEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIKAVEKF
DYTKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQELGREPK
PEEIAEEMDLSEDKVREILKIAQEPVSLETPIGEEEDSHLGDFIPDDDAPAPAEAAAFSL
LKEQLIEVLDTLTPREQKVLRLRFGLDDGRARTLEEVGKKFEVTRERIRQIEAKALRKLR
HPSRSKKLKDYLE
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaatcccaaagagataaaagataaaaaagagtctgtgaaaaaattagtagaaaaa
ggtaagaaaaggggaatgattacttatacagaaatcatggacgcccttgaggatattgat
atagacaaagatcaaatagatgaagtttatgagcatttagctacaatggggattgacata
gtaggagataaggaggatgacttagatgatctagaggtagatgacattgacttagagaat
gacattgtaatagaagaaaatattgaagatgattccgccttactcaaaggtattaatata
gatgaccctgttaggatgtatctgaaggaaatcggaaaagttcctttattatccgccgac
gaagaaatagcattggcacaaagaatggaagatggggacgaggaagcaaaaaaacgttta
gtggaagccaacttaagattagttgtaagtattgcaaaacgttatgtaggtcgtggaatg
ttgttcttagacttaatacaagaaggtaaccttggcttaatcaaagcagtagaaaaattt
gattatacaaaaggatataaatttagtacctatgcaacctggtggattcgccaagcgatt
acaagagcgattgcggaccaagcccgtaccataagaattcctgtacatatggtagaaacc
attaataagttgatcagagtttcaaggcagttattacaggaattaggaagagagccaaag
cctgaagaaattgcagaagaaatggatttatcagaagataaagtgcgagaaatattaaaa
attgctcaagaaccagtgtccttagaaacaccgataggagaagaagaagatagtcactta
ggagattttattccagacgatgatgcaccagcaccagctgaagctgcagctttttctcta
ttgaaggaacaactaattgaggtactagatactctgactcctagagaacaaaaagttttg
agacttagatttgggttagatgacggtagagctagaactttagaggaagtaggtaaaaag
tttgaggtaacaagagagcgtatccgccagattgaagcaaaggctttaagaaaattaaga
catcctagccgtagcaaaaaattaaaagactatctagaataa
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