Clostridium formicaceticum: BJL90_20185
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Entry
BJL90_20185 CDS
T05005
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cfm
Clostridium formicaceticum
Pathway
cfm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BJL90_20185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfm03019
]
BJL90_20185
03009 Ribosome biogenesis [BR:
cfm03009
]
BJL90_20185
Enzymes [BR:
cfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BJL90_20185
Messenger RNA biogenesis [BR:
cfm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BJL90_20185
Ribosome biogenesis [BR:
cfm03009
]
Prokaryotic type
rRNA helicases
BJL90_20185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNase
SecA_DEAD
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AOY77979
UniProt:
A0AAC9WH64
LinkDB
All DBs
Position
complement(4330406..4331761)
Genome browser
AA seq
451 aa
AA seq
DB search
MRKNFFNLGIDTELENLLNKNGIVEPTPIQAQTIPPLLTGKDVIAQAQTGTGKTFAFMLP
IMQNIDVKKPFIQALIMTPTRELALQITNEAKKLISAKGINVLAAYGGQDVDKQIRKLKQ
DVHMVIGTPGRLLDHLRRRTIDFRQLKMLVLDEADQMLHMGFLQEVEEIIHQTSKNRQTM
LFSATMPKEIHHLASQYMNKPIHIRVKSDKITLDEIKQLVIETTDRRKQAALFETLGKYN
PFLAIIFCRTKRRASALNEALIEGGYASDELHGDLSQAKREKVMKAFRKAEIQLLVATDV
AARGLDIEGVTHIFNYDIAQDAEAYIHRIGRTGRAGQTGVAITFVTPRDQHNLALIEKGI
NMKIERQKSDEEKREKSIKSTQDAREFREEKNKKNNKFKDRSPSKDKKFGKGKRTDNKKA
FNSNKEKSAQDKKTTGRGSRSTSKNTRKAPR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaaacttttttaaccttggcattgatacggaactagagaatctattaaataaa
aatggtattgttgagcccacccccatacaggcacagacgattccaccactattgacgggc
aaagacgtgattgctcaagcacagacaggtacgggaaaaacctttgcttttatgctgccg
attatgcaaaatattgatgtaaaaaaaccttttatacaagccttaatcatgacccctacc
agagaactggcacttcagattacgaacgaagctaaaaaacttatctctgcaaagggtatc
aatgtgttagcagcatacggcggacaagatgtagacaaacagattcggaaattaaaacag
gatgtacatatggtgattggtacgccaggaaggcttttagaccacctaagaagaagaacc
attgattttcgtcaattaaagatgttggtgctggatgaagcggatcaaatgcttcatatg
gggtttttacaggaagtagaggaaatcatacatcagacctcaaaaaaccgtcaaacgatg
ttgttctccgctacaatgcctaaagaaatacatcacttagcttcacaatacatgaataaa
cccattcatatacgagtaaaaagcgataaaataaccttagatgaaatcaagcagcttgtt
attgaaaccaccgatagacgcaagcaggcggcactttttgaaaccctgggcaagtataat
ccatttttagccattatcttttgccgtacaaagcgtcgtgccagtgctttgaatgaagct
ttaatagaagggggttatgcctcagatgaattacatggggacttgagtcaggcaaagcgt
gagaaggtaatgaaggcctttagaaaagcagaaatacagcttcttgtagcgacagatgtg
gctgctagaggattagatatagaaggagtaacccatatatttaattatgatatagcacag
gatgcagaagcttacattcatcgtataggccgtacagggagagctggtcagactggtgtt
gccattaccttcgtaacaccaagggatcaacataacttagccttaatagaaaaagggatc
aacatgaagatagaacgacagaaatcagatgaggagaaacgagaaaaaagtataaaatca
acacaggatgcgagggaattcagagaagaaaaaaataagaaaaataataaatttaaagac
agaagtccttctaaggataagaagtttggaaaaggaaagcgtaccgacaataaaaaagcc
ttcaacagcaataaagaaaaatctgcacaagacaaaaagactacgggtagaggttccaga
tccaccagcaaaaatactaggaaagccccaagatag
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