Corynebacterium falsenii: CFAL_08390
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Entry
CFAL_08390 CDS
T03037
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cfn
Corynebacterium falsenii
Pathway
cfn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CFAL_08390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfn03400
]
CFAL_08390
Enzymes [BR:
cfn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CFAL_08390
DNA repair and recombination proteins [BR:
cfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CFAL_08390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AHI03613
LinkDB
All DBs
Position
complement(1958321..1962130)
Genome browser
AA seq
1269 aa
AA seq
DB search
MIMTTPHGNPRIPSANSPSLEGVLRAAAQDDKLRGMLTHVGEPSLHMQAPDGAWPFVVGA
LAQRSPVLVVTATGRQAQDLTTVLKYMLGEAVELFPSWETLPHEKLSPAVETVSTRMRVL
RRLALASGAAGTAANKAATDPQGPLKVVVAPTRALVQPVQSNLGAVEPIRLAEGEELEFD
SLQQRLVELGYSHVDVVGKRGHFAIRGGIVDIFPATEELPVRVDFWGDEVSEVRPFNVGD
QRTIPGVEAPEVFVYPCRELIITDEVAGKAAKAAQDLAGQAELAEMLDKISQKIQVQGME
SLIPLLHTAPMVALPELMPDRTHTIVVTPAAVERRAVDLAETGQQFLEAGWDVAAMGGDA
PVDAAGVTGDVAYLSVAAVQKTQQKLGRPWWTLSPLGMADFSAGVADAAAAPDSTDAAGD
VLTLEYESAPRPHGDMDAIGTLMSDVRKRVESGGRVVFAAPTPAVAARMLRRFHEAGIAA
EAVGVDLTGAHGLGRLRKPKHTTADEPAPGQVTILHAVAFEGLQFPFAGDAKRSSLLFFT
ETDLTGNRVDAKATGKRKPAKKRNRVDPLALEPGDLVVHDSHGIGKFVTMMERTIGKGAD
ASRREYLVLEYAPSKRGGPGDQLYVPMDQLDLLSRYVGGEKPALSKMGGADWKNTKRKAR
GAVREIAGELVQLYAARQAAPGYAFAPDSPWQREMEEAFPFTETEDQFNAIEAVKADMEK
PVPMDRVIIGDVGYGKTEVAVRAAFKAVQSGKQVAVLVPTTLLAQQHMKTFTERMQDYPT
TIRELSRFTSPAESKEILKQMASGEVDIVIGTHRLLQTGVQWKDLGLIIVDEEQRFGVEH
KEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEDRHPVLTYVGPQEDKHV
AAAIRRELLRDGQVFYVHNKVKTIEQTASDIRRLVPEARVVVAHGQMSEEQLETTVQGFW
DREFDVLVCTTIVETGLDISNANTLIVENAHHMGLSQLHQLRGRVGRSRERGYAYFLYPR
GEVLTETSYDRLSTIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRL
VSEAVEAFRAMADGKPVDGREEEKKEIRIDLPLDAHIPVEYIASERLRLEAYRKFATAES
DEAIERVIEELRDRYGEPPREIELIAVVSRLRLLCRDLKVHEVVATGSKISFSPIDLQES
GQVRLKRLFPAANYRATTKIVLIPAPKVGQGMRAVPLRDEELVQWCADALTQLAGIPQRD
IRGKEPNTR
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgatcatgaccacaccccatggtaatccccgtatcccgtccgccaactcgcccagtctg
gagggcgtgctgcgcgccgccgcccaggatgacaagctgcgcggcatgctcacgcatgtg
ggggagccgagcctgcacatgcaggcacccgatggcgcgtggccgttcgtggtgggcgcg
ctggcgcagcgcagccccgtgttggtggtgacggccacgggtaggcaggcccaggacctc
acgacggtgttgaagtacatgctcggggaggcggtggagctgttcccgtcgtgggagacg
ttgccgcacgagaagctgtcgcctgccgtggagacggtgagcacgcggatgcgggtgctg
cggcgcctggctctggctagcggtgcagcgggcacggcagccaataaggcagccaccgac
ccgcagggcccgctgaaggtcgtcgtggccccgacgcgcgcgctggtgcagccggtgcaa
tccaatctgggcgccgtggagccgatccgcctggccgagggggaggagctggagtttgat
tccctccagcagcgcctcgtggagctgggttacagccatgtcgatgtggtgggcaagcgc
ggtcacttcgccatccgcggcggcatcgtggatatcttccccgccacggaggagctgccc
gtgcgcgtggatttctggggtgatgaggtcagcgaggttcgcccgttcaacgtgggcgat
cagcgcaccattcctggggtcgaggccccggaggtgttcgtgtacccctgtcgtgagctc
atcatcaccgatgaggtggcgggcaaggccgcgaaggctgcccaggaccttgcgggtcag
gcggagcttgcggagatgctggacaagatcagccagaagatccaggtccagggtatggag
tcgctcattccgttgctgcacaccgcaccgatggtggctcttccggaactcatgcctgat
cgcacgcacactattgtggtgacgcccgcagccgtggaacgccgggctgtggatctggcg
gagacagggcagcaattcctggaagccggctgggacgtggcggcgatgggcggcgatgcg
cccgtggacgccgccggggtgacgggcgatgtggcctacctcagcgtggctgccgtgcag
aaaactcagcagaagttgggccggccgtggtggacgctgtcgccgctgggcatggccgac
ttcagtgccggcgttgcagatgccgcagctgccccagattccactgatgccgcaggcgac
gtgctcaccctcgagtacgagtccgccccgcgcccgcacggtgacatggatgccatcggc
accctcatgtcggacgtgcgcaagcgcgtggaatccggcgggcgcgtggtcttcgcagcc
ccgacccccgcggtggccgcgcgcatgctgcgccgctttcacgaggcgggcatcgccgcc
gaggccgtgggtgtggacctgaccggtgcccacggcttggggcggctgcgcaagcccaag
cacaccaccgccgatgagcccgcgccggggcaggtcaccattctccacgccgtggcgttt
gaagggttgcagttccccttcgccggtgatgccaagcgctccagcttgctgttttttacg
gaaacggacctcaccggcaaccgtgtggacgccaaggccacgggcaagcgcaagcctgcg
aagaagcgcaaccgcgtggacccgctggccctggagcccggcgatctggtggttcacgat
tcccacggcatcggcaagttcgtgaccatgatggagcgcaccatcggcaagggggcggat
gcttcccgccgcgagtacctggttctcgagtacgctccgtccaagcgcggcggcccaggc
gatcagctgtacgtgccgatggatcagctggatctgctctcccggtacgtgggtggggag
aagcctgcgctgtccaagatgggcggcgcggactggaagaacacgaagcgcaaggcccgc
ggcgccgtccgcgagatcgccggtgagttggtgcagctctatgcggctcgtcaggccgcg
ccggggtacgcgtttgctcccgattccccgtggcagcgggagatggaggaggccttcccc
ttcaccgagaccgaggatcagttcaacgccatcgaggccgtgaaggcggacatggaaaag
ccggtgccgatggaccgcgtgatcatcggcgatgtgggctatggcaagaccgaggtggcc
gttcgcgctgccttcaaggcggtgcagtccggcaagcaggttgccgtgctggtgcccacc
acgttgctggcgcagcagcacatgaagacgttcacggagcgcatgcaggattaccccacg
acgatccgcgagctgtcgcgctttacttcgccggcggagtccaaggagatccttaagcag
atggcgtctggtgaggtggatatcgtcatcggcacgcaccgccttctgcagactggtgtg
cagtggaaagatctcggcctgatcattgtggacgaggagcagcggttcggcgtcgaacat
aaggagcacatcaagtcgttgcgcacgcacgtggatgtgctcacgatgtcggccacgccg
atcccgcgcacgctggagatgtcgatggcgggtatccgtgagatgtcgacgatcctcacc
ccgccggaggatcgccacccggtgctgacctacgtgggcccgcaggaggacaagcacgtg
gcggccgcgattcgccgcgagctgctgcgcgacggtcaggtcttctacgtccacaacaag
gtcaagacgattgagcagacggcgtccgatatccgccgcctcgtgccggaagcccgcgtg
gtcgtggcacacggccagatgagtgaggaacagttggagaccacggtgcagggtttctgg
gaccgagagttcgatgtgctcgtgtgcaccacgatcgtggagaccggcctggatatttcc
aacgcgaacaccctgatcgtggagaacgctcaccacatgggcttgtcgcagctgcaccag
ttgcgcggccgagtgggccggtcgcgggagcggggctatgcgtatttcctgtacccgcgc
ggcgaggtgctcacggagacgtcctacgatcgcctatccacgattgcccagaacaacgat
ctgggcgcgggcatggcggtggccatgaaggacttggagatgcgcggcgccggcaacgtg
ctgggtgcggaacagtccggccacatcgccggcgtgggcttcgacctctacgtgcgactg
gtcagcgaggccgtggaggcgttccgcgcgatggccgatggcaagccggtcgatggccgc
gaggaggagaaaaaggagatccgcatcgaccttcccctcgatgcgcacatcccggtggag
tatatcgcctcggagcggctgcgcctggaggcctaccggaagttcgccacggcggaatcg
gatgaggcgatcgagcgcgtcatcgaggagctgcgggatcgctatggcgagccgccgcgg
gagatcgagctcatcgcggtcgtctcgcgcctgcggttgctgtgccgcgatctaaaggtg
cacgaggtggtggcgacaggcagcaagattagtttcagccccattgatttgcaggaatcg
ggtcaggtgcgattgaagcggcttttcccggcggcgaattatcgcgcaacgacgaaaatt
gttcttattcccgcaccgaaggtggggcagggaatgcgtgctgtgccactgcgtgatgag
gagcttgtgcagtggtgtgccgatgccttgacccaattagcgggcattccgcagagggat
attcgtggaaaggaacctaataccaggtag
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