Camponotus floridanus (Florida carpenter ant): 105247961
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Entry
105247961 CDS
T03919
Name
(RefSeq) collagen alpha-2(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo04512
ECM-receptor interaction
cfo04518
Integrin signaling
cfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105247961
04518 Integrin signaling
105247961
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105247961
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
cfo00535
]
105247961
Proteoglycans [BR:
cfo00535
]
Extracellular matrix (ECM) proteoglycans
Others
105247961
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
105247961
NCBI-ProteinID:
XP_011250740
LinkDB
All DBs
Position
Unknown
AA seq
888 aa
AA seq
DB search
MLFIQFRQMNLQTWMFMIVHITYAQHVVRESAIKHGLCNGYKPGEDDLQTFDFISKLQLD
LLNARYSGMTKVRGSSRMQTAYRLEKDTDVTLPTKNITPTGLPEEFSLVYTLRARKSPKY
AWHIIKIVDARGEAQFLITMNPKKQTLDFSLINDEGKLQTVSFVNDRIFDKSWHKINFGV
FKDKLVLKVDCEYIGTEELKPRRSINVDGDISIAKMNNSKVTVPIDMQWMILNCDPARLE
RETCEELPKNLAASLQMKPPCERVCLQGFNNTNTNGSRHQHNFPGVPGIGVSGLPGPPGE
QGKTGAPGNTGARGFPGLQGPKGSIGSMGPPGLPGLPGRKGDRGERGDMGFPGLKGDQGP
RGFPGSPGNTNLSRLIGPPGEKGVKGERGNDGAQGQPGEKGELGDKGLDGIRGHDGAPGP
PGPPGIPGFPGPAGNVVFTDVPSIPGPPGPPGPTGPPGPSGPPGLPGLSGPPGSPGQRGP
KGDIGERGRDGILGLTDNNIIPGPPGPEGPVGPPGEDGLPGEKGEVGSIGFPGPPGEIGK
DGLPGLPGLQGSPGSRGEPGSPGLRGLEGVAGKPGPPGFDGKSGPKGSKGQQGEQGPIGS
RGLPGSLGLMGPPGIPGIPGLEGKPGLSGPPGPPGPPGSPGPSIPNNNFDSIGNPGVQGP
RGPSGSPGVPGERGAPGERGPEGQVGPPGIPGKDGAPGLQGLPGNRGQMGSPGLQGLPGH
SISEAEIRDICASVLREQMTEIAALMQGPPGPPGRNRPGRPGLPGPQGRPGDPGSPGLPG
ERGFVGLPGPQGPIGPQGPSGERGEKGDKGLEGVGSEGPPGPIGPPGPPGIDGIGLPGRQ
GDKGERGRPGIPGVGGAPGAQGPPGFCEFCNYPSSNYLHYTRGNEKGP
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgttatttattcaattccgacaaatgaatttgcaaacatggatgtttatgatagtacat
ataacttatgctcagcacgttgtgagagaaagtgctatcaaacacggattatgcaacggt
tataagcctggcgaggacgatctacaaacctttgacttcatcagcaagttgcaattggat
ctgctgaatgctcgttatagcggcatgacgaaagtccgaggcagcagtcgtatgcaaacg
gcatatcggttggagaaagatactgatgtcacccttccgacgaagaatattacacctact
ggacttccagaggaattttctttggtatatacattgagagctagaaaatcaccaaaatat
gcttggcatatcattaagatcgtagacgcaagaggtgaagctcaatttctcatcacaatg
aatcctaagaaacagacgttggatttttcactgattaatgacgaaggaaaattacaaaca
gtctctttcgtgaatgatcgcatattcgacaagagttggcacaaaataaatttcggagta
ttcaaggataaattagtacttaaagttgattgcgaatacattggtacggaagaactaaaa
ccacgcagatcaattaatgtggatggagacatatcgatagccaaaatgaataacagtaaa
gtcactgtaccgatcgacatgcaatggatgatcctaaactgcgatcctgcgagactagag
agagaaacatgcgaggaattaccgaaaaacttagccgcttcacttcaaatgaaacctcct
tgcgaaagagtctgcctacaaggattcaataatacaaatacaaatggatcccgccatcaa
cacaactttcccggagtaccaggaattggtgtatcaggcttacctggaccgccaggagaa
caaggaaaaacgggagcccctggtaatactggtgccagaggttttccaggattgcaaggc
cccaaaggatcgatcggatctatggggccaccgggtttaccaggattaccaggacgaaaa
ggtgatcgtggagaaaggggtgatatggggtttccgggtttgaaaggagatcaaggtcct
cgaggatttccgggttcaccaggaaataccaatttatcacgcttgataggtcctccggga
gaaaaaggagttaaaggtgaacgaggaaatgacggtgctcaaggacaaccgggtgagaaa
ggtgaacttggagacaagggattagacggaattcgcggtcatgacggcgcaccaggtcct
cccggccctccgggaattcctggtttccctggacccgcaggaaacgttgtatttacagat
gttcctagtattccaggaccaccaggccctcctggtccaacaggaccgccgggaccatca
ggtcctccaggattaccaggattatcagggcctcctggttcaccaggccaaagaggtccg
aagggtgatatcggagaacgtggacgagatggcatactcggattgacggataataatata
ataccgggaccacctggtcctgaaggacctgttggtcctcctggcgaagatggtcttccc
ggtgagaaaggagaagtcggatcaataggttttccaggaccacccggagaaataggaaaa
gatggacttccaggattaccaggactgcagggatctccaggctcacgtggagaaccaggt
tccccaggattgcgaggtttagaaggagtcgcaggaaaaccgggaccgccaggattcgat
ggaaaatcaggtccaaaaggcagcaagggacaacaaggtgaacaaggtcctatcggatct
cgtggcctaccaggaagtttgggtttaatgggcccgccgggtataccaggcataccagga
ttggaaggaaaacctggtttatccgggccaccaggtccgccaggacctccaggatctcct
ggtccttcaattccaaacaataactttgatagcattggtaatcccggtgtccagggacct
agaggtccatcgggctctccaggagtaccaggtgaaaggggagcccctggggaacgagga
ccagagggtcaagtaggtccgcctggaatacccggcaaagacggagcacctggattgcaa
ggattacctggaaatagaggtcaaatgggatcaccaggacttcaaggtctgccgggccac
agtattagcgaagcggaaattcgtgatatttgcgccagcgtactaagagaacagatgacc
gaaatagcagcactcatgcagggcccacctggtccgcccggtcgaaatcgtccgggccgt
cctggattacctggtcctcaaggtcgtccaggtgatccgggctcacctggtttgccggga
gaacgtggattcgtcggtttaccgggtccacagggtcccattggaccacaggggccatct
ggagaacgtggagaaaaaggggataaaggtctcgagggagtcggttcagaaggtccacct
ggtccgataggtcctcctgggccacctggtatcgacggcattggtttacctggaagacaa
ggtgacaaaggcgagcgaggcagaccaggtattcccggtgtcggaggagcgccaggagca
caaggaccacccggattttgcgaattctgtaattatcctagcagcaattatctacactac
actcgcggcaacgagaaaggtccttga
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