Camponotus floridanus (Florida carpenter ant): 105248270
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Entry
105248270 CDS
T03919
Name
(RefSeq) uncharacterized protein LOC105248270 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105248270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfo03021
]
105248270
03019 Messenger RNA biogenesis [BR:
cfo03019
]
105248270
Transcription machinery [BR:
cfo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
105248270
Messenger RNA biogenesis [BR:
cfo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
105248270
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
zf_PCFS4
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
105248270
NCBI-ProteinID:
XP_025265273
LinkDB
All DBs
Position
Unknown
AA seq
1895 aa
AA seq
DB search
MASTKSKEVADEYISSLSDLTINSKPLINMLTMLAEDNIEHASAIVQAVETHLQKVRSDI
KLPVLYLIDSIVKNVNGDYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPPK
KLFSLDVRVQSIDPAWPITAPPTNISSGSIHVNPRFFSTMPQQTTTSIVPPVKLSSGEPV
TTTEAVMREQLLKKQRELLELQKKKIELELLQAKASLEQQQRQLDKQAGSLKTEVVIPTA
HVPPTTEAAAQGKPVAPVVPNQTPKQVAKQFPAAAASLLKNAGANSGPRIAPASSIAVAS
AKPVSRDPRLKPTPAVHDVTTVPTIDLRQRPGTTSPKELRNEGQTQPVVNTIVTSNQLKQ
QLPSKPAVTSTINKPPASPAGSDNPTLLNVINNNHADTNLNNSNNKTFSGNINKDAVSHR
TSQKKDPRLTSNSVNLNSSKIGQGLSICNNSSSSIMSASNRGSGGDSNKSKDSKSSNSSR
GSSSSIADKSSTSSKSSHRKVGNKSRSKQPQICPNKIQKVDRDSSPVRSKSREKDSGDSS
PSSRTSPQSSFQTSKNRKKNTKSRKRSPSPPYRIPRRNDIKSSSSLSSSGGVTEEEQSGS
LIVSPPHPPTFKEIRPNARQRNYVRRNKDDSLSPERSPASAGNTQIAAEPTLESSSKDED
LRASLSLPGTTVSISEKKEDLDLRVLPSVNASKRRSEDIESSPAKKTKAEKFDALFGNED
VDLRTLTHPKAGRPPTPPPPVISGEDGKDSWAKLKTPPKNERDKQVNNADDKRERDRNRD
RLGRLRLYNKLPDDPKERRRTLSNEEQDTRPGRRGRENDKPERNDDRNIEIIMKQAAEQL
NQGLITKTQYNTLIQEVLHMSEDRKLRAAQRKEKEAGTVIWEKGINMDLVSGAADRAATF
SPSNDKEVIRNKEHPISRNPNGPRWQNQPWQQPWAHPPGPPYGGPQGHFNSDMRPIGPWQ
NPRHFGPMRPDYQYHGGFNHNMGPNPRLGPGMMGPIGPNGPIMSNLLPNGPIGPMGPMPN
SMAMGCHPAMMMNNGPMTNLMTNPNIPSLASGRNLSPNASTKYELDDNDQSYGGTTVKNP
GPHNRELSPPDPKLLAEITRDTMKSINIDNIPREIRYYGQTGVVFMNWDDPREIGFQDGI
RRILIDDKDTITCAFNDQYKEFMYEGEIHRIKLGAPTRELYVDDRWYECYFGGMPITIEL
GGKTVSIKLEGPPPQVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIFEIEGKPHT
LEFTDALQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRAGHVKITGMRGES
PTESPPTTQAQKPKVDAAPTPSQVPVVEHESTSQDGSDFTSTSKPDLQLDILSSVLPSAM
APSSGLSYEAEPVENPSAPAPTLPLNMNELFQRLVETGIVPSLVGQKKQEEEEKKEPEIS
PVSFDKPETLKIKQPAIATALYSGMQCSSCGARFAPELATRYSHHLDWHFRQNRRERDSA
RKAHSRPWYYDISDWIQFEEIEDLEDRAQSWFETEKQTAETEGMATDDTPQETLQPSVPT
GSDEDSRCQVCHDAFEQFYNEEKEEWHLRPAVNYEKRNYHPLCLEDYKEKSLVRALEKTA
LALEEAVSEIEESKKECTEETSGNEQEKSNVEISNKELEPVENSEQIEEGPLETVTSETE
EKSANIENSEVTQVEVEEKEKMEDAIEENTVTADTKENAPAMYEEEKSLSEGVTTPFENI
KIKEEPLDDIGEQDNSDMFAFLDKLEHQIKEEPMEPEPEPEPDPEQIVNESGTVDTTYAA
VKSSIDGNVELDSTPALVPAAPSRIKINITKPLNSNKESEENKEKEKTTVETSVEENAEQ
PLIPASIKPSLQGRKLSNLPPVEKGQELSGLCSIM
NT seq
5688 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgacaaagtctaaagaagttgcggatgaatacatctcatccctatcggatctt
acaatcaacagtaagccgcttattaacatgctcaccatgttggccgaagataacattgaa
cacgcatcagcaatagtgcaagctgttgagactcatctacaaaaggtgagaagtgacatt
aagttaccagtactctatctcatcgactcgattgtcaagaatgtaaacggagactatctg
aatctctttacacaaaatatagttaatacgttctgcggagtgtttgaaaaggtcgatgag
aacacaagagccagcatgtggaagttgcggcaaacgtggaatgatgtattcccaccgaag
aaattattttcattagatgtgcgggtacaaagtatcgatcctgcatggccaatcactgcc
cctcctactaatatttcttcaggatctatacatgttaatccacgttttttttccacgatg
cctcaacaaactacgacatcaattgtcccgcctgttaaattgtcatcaggggaaccagta
acaacaacagaagcagtaatgcgagaacagttgctgaaaaagcaacgagaattgttagaa
ttgcagaaaaaaaagattgaattagaactattgcaagctaaagcaagtttagagcaacaa
cagaggcaacttgacaaacaagctggtagcttgaaaacagaagtggttatacctactgca
catgtccccccaactacagaggcagcagcacaaggaaaacctgtagcacctgtagtacca
aatcaaacgccgaaacaagtagcaaaacaattccctgcagcagcggcgtcacttttaaag
aatgcaggagcaaacagcgggccacgaattgcaccagcaagtagtatagcagtagcatca
gctaagccagtctcacgagacccacgtttgaagcctactcctgctgttcatgatgtgaca
acagtaccaacaatagatctacgacaacgaccgggtacgaccagtccgaaagaattacgg
aatgaaggtcaaacgcagccagtcgtaaatacaattgtaacttcaaaccaattaaagcag
cagttaccttcgaaaccggctgtaactagcactatcaacaagcctccggcgagtcccgcc
ggttccgataatccgacgttattaaacgttattaataacaatcatgctgatacgaatctg
aacaatagtaataataaaacttttagtggtaatataaataaagatgctgtctcgcatcga
acaagtcaaaagaaagaccctcgattgactagtaatagtgttaacctaaacagctccaaa
atcggtcaaggtttatcgatttgcaataatagttcgtcttcaataatgtcagcgagtaat
cgaggaagtggaggtgactccaacaagtcaaaagactcgaagagctcgaattcatcacgt
ggttcttcgtcttcgatagccgataaatcttccacttcctctaaatcctcgcacagaaaa
gtagggaataagtcgcgatctaaacaaccgcagatctgtccaaataagattcaaaaagtc
gacagagattctagtccagttaggtcaaaatctcgtgaaaaagacagcggagacagttca
ccgtcctcgcgtacttctccacaatcctccttccaaacctctaaaaaccgcaagaaaaat
accaaatccagaaaacgtagtccaagtcccccatatagaattcccaggcgtaatgatata
aaatcgagttcaagtttgagcagttctggtggtgttactgaggaggagcaatctggttcg
ctgatagtatctcctcctcacccaccaacattcaaagaaatcagaccgaacgctagacag
agaaattatgtaagacgaaataaagatgacagtcttagtccggaacgttctccagccagt
gctggaaatactcaaatcgctgctgagccaacattggaatcctctagcaaagatgaagat
ctcagagcatcgctatctctacctggcactactgtttccatatccgaaaagaaagaggat
ttagatctacgagtattaccatctgttaacgctagtaagagacgcagcgaggacatagaa
tcgtctccagctaaaaaaactaaagctgaaaagtttgatgcattatttggtaacgaagac
gtagatttacgtactctgacccatcctaaagccggtcgtcctccgacacctccaccgccc
gtaatttccggggaagacgggaaagatagctgggcaaaattgaaaacgccgccaaagaat
gaaagagataagcaagttaacaacgctgatgataaacgcgagagagatcgtaacagagac
agactaggtcgtctcaggctttataacaagcttccggatgatcctaaagagagaagaaga
acattatcgaatgaagaacaagataccagaccagggcgtagaggccgggagaatgacaag
cctgaaagaaacgacgatagaaatatcgaaattataatgaagcaagccgccgaacaatta
aatcaaggattgattaccaaaacgcaatataacactttgatacaggaggtattgcacatg
agtgaggatcgaaaattgcgagccgcacagcgtaaggagaaagaagctggcactgtaata
tgggagaaaggaattaacatggatctcgtgtccggtgccgcagatcgcgctgcgacgttc
agtccgtccaatgacaaagaggtgatacgaaacaaagaacatccaatatcgcgaaatcct
aacggcccaagatggcagaatcagccgtggcaacaaccgtgggcacatccaccaggacca
ccatatggcggaccgcagggacatttcaattcggacatgagaccgatcgggccttggcag
aatccgcgacattttggaccgatgagaccagattaccagtatcatggtggcttcaatcac
aatatgggacccaatccacgattagggccaggtatgatgggtccaataggtcctaacggt
ccgatcatgtcaaatcttttgccaaacggtccaatagggccgatgggcccgatgccaaat
tctatggcaatgggatgtcatcccgcgatgatgatgaacaatggaccgatgacaaatctc
atgacgaatccaaatataccgtctttagcatctggtagaaatttatcgccaaacgcatcc
accaaatacgagctcgatgataatgatcaaagttatggcggtacaacagtaaagaatccg
ggaccgcacaatcgtgaattgtcaccgccggatccaaaattgttggccgagataacaaga
gataccatgaaatctataaacattgataatataccgcgagaaattcgttattacggacag
acaggtgtagtgttcatgaattgggatgatccgcgagagatcggcttccaggacggtata
agaagaatattaatcgacgacaaagatactataacttgcgcatttaacgatcaatataag
gagtttatgtacgagggagaaatccatagaatcaaattaggcgcacctactcgtgaattg
tacgtcgatgatcgttggtatgaatgttattttggcggtatgccgataacgattgaactc
ggtggtaaaacggttagtataaaactggaggggcctcctccacaagtcaagatcggtact
gtgaaaagaacggatctcgtggtagcgaaaattaatcttatcatcaacgcacgaaatatg
gtgccagtatttttggatgcgaaaccacaaatatttgaaattgagggaaaacctcataca
ctggaatttacagatgcgttgcaaactgttcttttgaacggacgaccgttcaaagttgaa
ttcgggggattgcctaagcccattattgtcagagacaagaagcatttcattaggttttca
gtgttgccaaggggtgtacgtgctggacatgttaaaattactggaatgagaggtgaaagt
cctaccgaatccccaccaacgactcaagctcaaaaacctaaagtagatgctgcacctacg
ccaagtcaagtaccggttgtagaacatgaatctacgtcgcaagatggttcagatttcact
tcaacttcaaagccagatttgcaattagatatattatcatcagttctaccatcggcaatg
gcgccgtcgtctggtttatcgtacgaagccgaaccagtggaaaatccgtcagcaccagca
cccacattaccgctgaatatgaacgaattgttccaaagattagtcgaaactggcattgtt
cccagtctcgtgggacaaaagaaacaggaagaagaagaaaagaaagaacccgaaattagc
ccagtctccttcgataaaccggagactcttaaaatcaaacaaccagctatcgccacagcg
ttgtacagcggtatgcaatgtagttcctgtggtgcaagattcgcacctgaattagctact
cgatatagccaccatttagattggcatttcagacaaaacaggcgtgaacgagactccgcg
agaaaagcgcattctcggccatggtattacgatatcagtgattggatacaattcgaagag
attgaagatttggaggatagagctcaaagttggttcgagactgaaaaacagacggcagaa
acggaaggcatggctacagatgatacccctcaggaaacattgcagcccagcgtaccgact
ggcagtgatgaggattcgcgttgccaggtatgccacgatgcattcgaacagttttataat
gaggaaaaggaggaatggcatttgagaccagcagttaattatgaaaaaaggaattatcat
ccactctgtctagaagattataaggaaaagagtctagtgagagcattggaaaaaactgcc
ttggcactcgaagaggcagtctcggaaattgaggaaagtaaaaaagaatgtactgaagaa
acgtccggaaatgaacaagaaaaatcaaatgtagaaatatcgaataaggaacttgaacct
gtggaaaattcggaacaaatagaagagggtcccttagaaactgttacatcagaaactgaa
gaaaaatccgctaacatagaaaattctgaagttacacaagtcgaagtagaagagaaagaa
aagatggaagatgccattgaagaaaatacagttacagcagatactaaggaaaacgcacct
gcgatgtatgaagaagaaaagtctctgagcgaaggtgttaccacaccattcgagaatatt
aaaattaaagaggagccattagacgacattggtgagcaagacaatagcgacatgtttgct
ttcctagataaattagagcaccaaattaaagaagaacctatggaacctgaacccgaaccc
gaaccagatcccgaacaaattgtgaatgaatctggtactgtagatacgacatatgctgca
gtgaaaagttccatcgatggaaatgtagaattagactcgacaccagcacttgtcccagcg
gctccatcgcgaattaaaatcaatatcactaagccactaaacagtaataaagaatcggaa
gagaataaagaaaaagaaaaaacaacggttgagacctctgtagaggaaaatgcggaacaa
ccgttaatcccagcttctattaaacccagtttacagggtagaaagctatcgaatttacct
cctgtggagaaagggcaagagttgtcaggactctgctctattatgtaa
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integrated database retrieval system
