Camponotus floridanus (Florida carpenter ant): 105248815
Help
Entry
105248815 CDS
T03919
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfo03041
]
105248815
Enzymes [BR:
cfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105248815
Spliceosome [BR:
cfo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
105248815
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
R3H
Helicase_C
DEAD
Ank_2
nSTAND3
AAA_19
HA2_N
Ank
PhoH
AAA_22
ATPase
Ank_4
UvrA_inter
AAA_14
AAA_7
NPHP3_N
AAA_11
SRP54
ABC_tran
Motif
Other DBs
NCBI-GeneID:
105248815
NCBI-ProteinID:
XP_011252121
LinkDB
All DBs
Position
Unknown
AA seq
1154 aa
AA seq
DB search
MPRRKQQRHRPIGEDTRIAVNLTIKKLLETQDQKELEFPSSYTAEERAYIHELARELGLK
SKSRGKGMNRFLTVYKREGSTIVQADAVIKLRKPSKQSIYNLMQSFPLNHKECQDLLPPI
ERERPLNNDVNTNTKTMGRLNNSIPQVPQLKTNFDVLHFRKSLPIFSAREEIINALNNHQ
VVIIAGETGCGKTTQVPQYILEHYQQKHQACRIICTQPRRLSAVSVAERVAFERDEKIGQ
TFGYQIRLESRVAPKTLLTYCTNGVLLRTLMGGDSALTTLTHIIVDEVHERDRFCDFLLI
ALKDALVKYRSLKLILMSATMDISIFAKYFNKCTVINVPGRSYDVDVYFLEDILKMTGYM
TKEMLIKKKEFLKCKDKQKTLESWKQYKPQHSNRNTRSEKNVLPAPILAQQNDPIPEKVK
LEPWLIEEMDKSIFDAWVNGREDNFAQLLHFILSENVSVDYQHSETSITPLMAAAVRGCI
NTTEQLLNLGANLHLRAVNDYTALDWAKSRNHTECAELIEAYMKTYDCVVPNNELAHVTD
TTSLSEEDKLLLDVYHHTFNDDNIDYNLLLELIFYIHVKMPPGSILIFLPGYDDIVTMRE
RINAEEKRMNQNLRYNLYVLHSNMQTCDQKKVFKPSPQGTRKIILSTNISETSITIDDVV
YVIDSGKVKEKSFDAISGVCTLTSNWISQACAKQRKGRAGRCRRGICYRLFSSVRYNNMQ
LYQTPEILRLPLQELCLFTKHLTPGNTPIAEFLDKALEPPSNVVTRNAVQLLKTIDALDP
WEDLTELGSHLLDLPIEPRLGKMLLYAVVLKCLDPILTIVCSLAYKDPFILPSQPSQKRA
LTAARKKFATGTYSDHMVVLRAFQGWQNARAAGKERAFCEKNFISAPVMEMVVGMRTQLL
GQLRASGFVRARSPGDIRDLNSNSENWAVVKAALTAGLYPNLIRADREHMQLRTQKEVKV
FFHPSSTLRDYPKSPRMTSAQTHAANVQTLPCDWLIYEEMSRTGRFCHVKVVTLVNPLTV
ALFSGPARLPMNIICETEAVPESESDSEVDESHEGTIFKLDDWVVFKLDPETAQLFLYLR
QKWNALFLRRMKAPSKAMSALDEKVINTLVTVITNEEQACGLQQPAGIGQRPRPLIVDYY
PANVRRDDYPERYF
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgccacgcagaaaacagcaaagacatcgtcctataggggaggataccagaatagcagtg
aatttaactataaaaaaattattagagactcaagatcaaaaggagttagagtttccatcc
tcgtacacagcagaagaaagagcttacattcatgaactagctagagaacttggtctcaaa
tccaaaagccgaggaaaaggtatgaaccgattcttgacagtatataaaagagaaggatca
acaatagttcaagctgatgctgtgataaaattgcgaaaaccatcgaagcaaagcatatat
aatttgatgcagtcttttccattaaatcacaaagaatgtcaagacttgcttcctccaatt
gagagggaacgtcctcttaataatgatgtaaatacaaacactaagacaatgggaaggctg
aataatagcataccacaagtacctcaattaaaaactaattttgatgtgctgcatttccgc
aagtctttaccaatttttagtgcgagagaagaaattattaatgcattgaacaatcatcaa
gtagttataatcgcgggtgaaacaggatgcggtaaaactacacaagtaccgcagtatatc
ttggaacattatcagcaaaagcatcaagcttgtagaatcatttgcacgcaacctaggcgc
ttgtcagctgtatctgtagcagaaagagtggcatttgagagggacgaaaaaatcggtcag
acattcggatatcaaataagactggaaagtagagtagctccaaaaactcttttgacatat
tgtacaaatggagtactacttagaactttaatgggtggtgattctgctctaactacgctc
acgcatatcatcgtcgacgaagttcacgaacgagatagattttgtgattttcttttgata
gccttaaaggatgcgttagttaaatatcgttccttaaaactgatacttatgagtgctaca
atggatattagtatctttgcaaaatattttaataaatgtactgtcatcaacgtcccaggc
cgatcgtacgatgtggatgtatatttcttggaggatattttgaaaatgactggttatatg
acgaaggaaatgctcataaaaaaaaaggaatttttaaaatgtaaagataaacaaaaaact
ttggaatcttggaaacaatataagccccagcattctaatagaaacaccaggagtgaaaaa
aatgtgttgcctgctccaatattagctcaacaaaatgatcctataccggagaaagttaag
ttagaaccttggctaatagaagaaatggataagagtatttttgatgcttgggtaaatggc
agagaggacaattttgcgcagctcttgcattttatactttcagaaaatgtatctgtggat
tatcagcattctgagacttctataacacccttgatggctgctgctgttagaggctgcata
aacacaaccgaacaacttttaaatctaggagcgaatcttcatttgagagccgttaatgat
tataccgcattagactgggcaaagagcaggaatcatactgaatgtgctgaattaattgaa
gcttatatgaaaacttacgattgcgtggtaccaaataatgaattagcacacgttacggac
acaacttctctctctgaggaagataaactattgctcgatgtatatcatcatacatttaac
gatgataatatagattacaatttacttttagaattaattttttacattcatgtaaaaatg
cctcctggctctattttaatatttttaccgggatatgacgatatcgtaacaatgagggaa
agaataaatgcagaagagaaaagaatgaatcagaacctacgttacaatttatatgttctt
cattcaaatatgcagacttgtgatcaaaagaaagtatttaaacccagtcctcagggtaca
cgaaagattattctttctacgaatatatcagaaactagtatcacaatcgatgatgttgtt
tacgtcattgattcgggaaaggttaaagaaaagtcttttgatgctatatcgggcgtatgt
acgctgacttccaactggatatctcaagcatgtgcaaagcagcgaaaaggtagagcaggt
agatgtaggagaggaatttgctatcgtctattttcctcggttcgatataataatatgcag
ctttaccaaacacctgagattctacgattaccattacaagaactgtgtttattcacgaaa
catttaacaccgggaaacacacctatagctgaattcttggataaagctttagagccacca
tctaatgtagtgaccagaaatgcagttcaattattaaagacaatcgatgcgctagatcca
tgggaagacctcactgaattaggaagtcatttactagatttgccgattgaaccgagactc
gggaagatgttactgtatgccgttgttctaaaatgcttagatcccattttgacaatcgtt
tgtagtttagcatacaaagatccttttatactaccatcgcaaccatcgcaaaagagagct
ttgactgcggcacgaaaaaaatttgccactggaacgtattcggaccatatggtagtattg
cgagcattccaaggttggcagaatgctagagcggccggcaaggaacgtgccttttgcgag
aagaattttatctccgctcctgtgatggagatggtggtcggaatgcgtacgcaactactt
ggtcaattgcgcgcatctggattcgtcagagctaggagtcctggagacattcgggattta
aattctaattcagagaattgggcagttgtgaaagcagcattgaccgcgggcttgtatccc
aatttaattcgagctgatcgagaacacatgcagttacgaacgcaaaaagaagttaaggta
tttttccatccatcgtccaccttgagagattatcctaaatctccgaggatgacatccgct
caaacacacgcagctaatgtacaaactttaccatgtgattggctcatttatgaagagatg
agccgtacaggacgtttctgtcacgtgaaagtcgtcacactcgttaacccattaactgta
gcgctatttagtggaccagctagattaccaatgaatataatttgtgaaactgaagctgtc
ccggaaagcgaatcggattcagaggttgacgaatctcacgaaggaactatttttaaactg
gatgattgggtagtgtttaagcttgatcctgaaacggcccaattgtttttatatttgcgg
cagaagtggaacgctttattccttaggcgtatgaaagcaccgagcaaagctatgtcggcg
ttagacgaaaaagttataaacactttagtgacagtgattacgaatgaggagcaagcgtgt
gggctccaacaacccgctggtattggccaacggccacgtccattaatcgtcgattattat
cctgctaatgttagaagagatgattatccagaaagatatttctaa
DBGET
integrated database retrieval system
