Camponotus floridanus (Florida carpenter ant): 105249247
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Entry
105249247 CDS
T03919
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105249247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfo03019
]
105249247
Messenger RNA biogenesis [BR:
cfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105249247
mRNA degradation factors
5'-3' decay
Decapping complex
105249247
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Androglobin_IV
Motif
Other DBs
NCBI-GeneID:
105249247
NCBI-ProteinID:
XP_011252870
LinkDB
All DBs
Position
Unknown
AA seq
724 aa
AA seq
DB search
MADSFFGFDTTLGDNNLEDGLDGPLEEDEFEEEEYDALNDETFGPDATIGDWEEDHEKLA
EITESNRPHNQNATNKKNISNIDIEDNLSHLVLDKEGIVPRPGVWGSPLNLSPPKAQPRL
SLPTLKNACTVEELERGLVANRPPPGLSKPQTQQQQRKSEGSLLFEALSLNEKFQVNGLP
PTRFPPGLGLPGAHPIVLPNIRVPHPQLMQPPRLLGLINQPGNMLRYPLPPHLMLSQPVP
RQPLHGSYNFPQPPHPNLGGPQFLRPDHMMSAFPNNQANHHQQHQHSYLGSQRNQNRSYY
HNDQQVGHQAFFKNNQYPHRNHDRTNQRYYHQHYSHGVNGNASGDEVSGKLAIKAHEKQW
LINIQLLQLNTIQPYVDDHYYIVFCDKRNKRHANQEQKDKKHHNNNGYHRDHRDWEPTSQ
APSRSAYTPAQFENSLGKLHCSSVTAPRKLIDMDVVSNSDSQSNSQSQQKDTKKTRQLLL
EIERLYTLLFKLEDLSNPLASIPEPQQQQEGEAETNTIKTEPELICITLSCLQQLIQDDK
LASMLSIRKGKTLLLRFLPHLNVTEYNKQLRELWTAIFKGLAVIGRRDCHLLTDFYSEFR
RWLNAVKDFDTVLRLARALSDSATHSLKNNSLTFALMNKFGVSAIAAMLEQAEQLCATND
SLPSEWSTFIETLIEIIGGSSPCVTPCQPIAANTLNKHLNRISSLKIERYTTLTRLLTET
NPLR
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcagactcttttttcggtttcgataccacgctcggagataacaatttagaggatgga
ctggatggtccattggaggaagatgagtttgaagaggaagagtacgatgccttgaatgac
gaaacgtttggccctgatgcgactattggtgattgggaggaagatcatgaaaagcttgcc
gaaattacagaatcaaatcgcccacataatcagaatgcgacaaataaaaagaatatttct
aatatagatatcgaggataatttatcacatttggtattggataaagaagggatagttcca
cgacctggtgtatggggtagccctttgaatctatctcctccaaaagctcaaccacggtta
tcattgccaactttaaaaaatgcttgtactgtggaagaattggaaagggggcttgttgca
aataggccacctccaggtctcagtaaaccacaaacgcaacaacagcagaggaaatctgaa
ggttcgcttctctttgaagctttatctttgaatgaaaaatttcaggtcaatggcctacct
ccgacacgttttccaccggggttaggcctacctggagcccatcctatagttttgcccaac
ataagagtaccacatcctcaattgatgcaacctcctagactattaggcttaattaatcaa
ccaggcaatatgttacgttatcctctaccaccgcatttaatgttatcacaaccagtacca
aggcaaccccttcacggttcttataatttccctcaaccaccacatcctaacttaggaggc
ccacaatttcttcgaccagatcatatgatgtctgcatttcctaataatcaagccaatcat
catcaacaacatcaacattcttacttaggaagtcagagaaaccaaaacagatcttactat
cataatgaccaacaagttggacaccaagcattttttaagaataatcaatatcctcatcgc
aatcatgacagaactaatcagagatactatcatcaacattattctcatggtgttaatggt
aatgcttcgggagatgaagtctcaggaaaacttgctataaaagctcacgagaaacaatgg
ttaatcaatatacaactgttacaacttaatacaattcaaccatatgttgatgatcattat
tatatcgtattctgtgataaacggaataagcgacatgcaaatcaagaacaaaaagataaa
aaacaccataataacaatggatatcatagggatcatagagattgggagccaacgtctcaa
gctccttcaagatcagcatatacgccagctcaatttgagaattcattaggtaaacttcat
tgcagtagtgttactgcaccacgcaaacttatagatatggatgttgtatcaaatagcgat
tctcagtctaattctcaatcacaacaaaaggatactaaaaaaacacgccaattgctgctt
gaaatcgaaaggctgtatacattgttattcaaactcgaggatctaagcaatcctcttgct
tcaattccggaaccgcaacaacagcaggaaggagaagctgagacaaatacgattaaaacg
gaaccagaactaatttgcataacattatcatgtttgcaacaattaatacaagatgataag
ttagctagtatgctaagtattcgaaaaggaaagacattattactgcgttttttacctcat
ctgaatgtgacagaatataataagcagttaagagaattgtggactgcaatatttaaagga
ttagccgtgataggccgtagagattgtcatttattaacggacttttactccgaatttcga
agatggcttaatgctgtgaaagattttgatacagtactgcgattagcaagagcattatcg
gactcagctactcattctcttaaaaacaacagtttaacttttgctcttatgaataagttt
ggtgtgtctgcaatagcagcaatgctcgagcaagcagaacaattatgcgctacaaacgat
tccctgccttctgaatggtcaactttcatagaaactctaattgaaataattggtggctcg
tcaccctgcgttacaccttgccaaccgattgctgcaaatacgctcaataaacatctgaat
cggatttccagtttaaagatagaaaggtatacaacgctaacgcgcttattgactgaaacc
aatcccttacgatag
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