Camponotus floridanus (Florida carpenter ant): 105249601
Help
Entry
105249601 CDS
T03919
Name
(RefSeq) uncharacterized protein LOC105249601 isoform X1
KO
K03679
exosome complex component RRP4
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105249601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfo03019
]
105249601
Messenger RNA biogenesis [BR:
cfo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
105249601
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
105249601
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
Isochorismatase
ECR1_N
KH_6
EF-hand_6
EF-hand_1
EF-hand_7
EF-hand_5
EF-hand_8
EH
ECR1_N_2
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
105249601
NCBI-ProteinID:
XP_011253486
UniProt:
E2A8N4
LinkDB
All DBs
Position
Unknown
AA seq
582 aa
AA seq
DB search
MSQYPPIEVRLAVNRVDFNLITNEGIQPRLYTPGEEISSQPDFLRGHGTYVDEEKTLRAS
VAGVLEKVNKLISIRPLKARYNGEIGDLIVGRITEVQQKRWKVDVNSKLDAVLLLSSVNL
PGGELRRRSAEDEQTMRRYLQEGDLICAEVQSIFADSSLSLHTRVLKYGKLSQGIMLKVP
PMLIQRKKTHYHNLENGATLILGYNGYVWIGANIQNVDKSEGGFTEDLSRIPLENRESLE
TSSQQVELRDMDACFNAFDKDGDGLLSISEFDLICRALFRNDRGKIYGLEEEQLREVYSI
FDFKDDGMIDKEEFEVCWNRWIKVCTRPKSAFLIVDVQNDFITGSLNIKHCAAQHDGSEV
IEPINRLLETVPFDAVFYSLDWHPVDHVSFIDNLHLREVDISSNISKEAARVYDTVTFQG
PPLLKQRLWPRHCVQDSWGAELHKDLKIVNNAIKIYKGTNPEVDSYSVFWDNKKLTETTL
SSQLQEKGATDIYICGLAYDVCVGATAVDALTSGYRTILIDDCSRGVDLVDIEKTKATVI
ASNGVIVNSSQVKAMMEGRDRRPELGYKLALEIKHKLRFDDE
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaatatccgcctattgaagttcgtctagcggtaaacagagtggattttaactta
ataacaaacgagggcatccaaccgcgactctacacacccggcgaggagatatccagtcaa
ccggatttcctcagaggtcacggaacttacgttgatgaggagaagacgttgcgcgcttcg
gtcgctggagttctggagaaggtaaacaaacttatatccatcaggccactgaaagcgcgc
tataatggcgagatcggggatctcatcgtgggtagaataacagaggtgcaacaaaaacgt
tggaaggtcgatgtaaattccaagctcgatgctgttctgctgttatccagcgttaatcta
cctggtggtgaattgagaagaagatctgcagaagatgaacagacaatgcgtaggtaccta
caggaaggagatttaatttgcgcagaggtgcagtcaatttttgctgatagttccctctcc
ttgcacacgcgagtgttgaaatatggcaaactatcacagggaataatgctgaaagtacca
ccgatgctcattcaacgcaagaaaacgcattatcataatctggaaaatggtgcgactcta
atactcggttacaatggctatgtatggatcggcgcgaacattcagaatgtcgataaatcc
gagggcggcttcaccgaggatctgtcgagaatcccgctggaaaatcgtgagagcctggaa
acaagtagtcagcaagtagagctgagagacatggacgcatgtttcaatgccttcgataaa
gacggcgacggattgctatccatctcagagttcgatctcatatgccgcgcgttatttcga
aatgatcgcggaaagatctatggcctcgaggaagagcagctgcgcgaggtgtactcgata
tttgatttcaaagacgacggcatgatcgataaggaagaattcgaggtttgctggaatcga
tggatcaaagtatgcacgcgccccaagagcgcttttttaatcgtagacgtacaaaatgac
tttataacgggttctctaaatataaagcattgcgctgcacagcatgacggatcggaagtg
atcgaaccgattaatcgattgctagaaaccgtgccattcgacgcggtattttactctctg
gactggcatcccgtggatcacgtgtcttttatcgataatttgcacctcagggaagtggat
atcagcagcaatatctcgaaggaagcagcgcgggtgtacgacacggtgacatttcagggg
ccgccgttattaaagcaacgtttgtggccgcgtcattgcgtgcaggactcgtggggcgcc
gagcttcacaaggacttgaagattgtcaacaatgcgatcaagatctacaagggcactaac
ccagaagtggattcgtattcagtattttgggacaataagaagctaaccgagaccacactg
tcatcgcaactgcaagaaaagggcgcgactgacatttacatctgtgggcttgcctatgac
gtatgcgtgggtgctacagcagttgatgcgcttaccagtggttaccgcactatacttatc
gatgattgtagtcgcggcgtagatctcgtcgacatcgagaaaaccaaagccacagtgata
gccagcaatggcgtaatagtgaattccagccaagtgaaggcgatgatggagggaagagat
cgacgaccagaactaggctacaagctcgctctggaaattaagcataaattgagattcgat
gatgaataa
DBGET
integrated database retrieval system
