Camponotus floridanus (Florida carpenter ant): 105250110
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Entry
105250110 CDS
T03919
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cfo03016
]
105250110
Enzymes [BR:
cfo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
105250110
Transfer RNA biogenesis [BR:
cfo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
105250110
Prokaryotic type
tRNA splicing ligases
105250110
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
105250110
NCBI-ProteinID:
XP_011254350
UniProt:
E2AA83
LinkDB
All DBs
Position
Unknown
AA seq
506 aa
AA seq
DB search
MVVRQYQEELKYLEKINEYCWRIKKGFQPNMNVEGVFYVNHTLERLMFEELRNACRPGAV
GGFLPGMKQIANVAALPGIVWRSIGLPDVHSGYGFAIGNMAAFDMDDPKSIVSPGGVGFD
INCGVRLLRTNLFESDVLPIKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KWAACKMGIEEKGQICVMIHSGSRGFGHQVATDALVQMEKAMKRDNIETNDRQLACAHIK
SQEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIE
EHMVDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGM
KETFGSTCHGAGRALSRAKSRRNLDYKQVLEKLEELGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtgaggcagtatcaagaggaacttaaatacttggaaaagataaatgaatattgt
tggagaatcaaaaaaggcttccaacctaacatgaatgttgaaggagtgttttacgtgaac
catacattggaacgtttaatgtttgaggagttgcgcaatgcatgtcggccaggtgcagtt
ggaggttttcttcctgggatgaaacagattgctaatgttgcagctctgcctggtattgta
tggagatccattggattaccagatgtacattctggatatggctttgctattggtaacatg
gcagcatttgacatggatgatccaaagtcaattgtatcacctgggggtgttggctttgat
ataaattgtggtgttcgtctattgcgaacaaatttatttgaaagcgatgtcctaccaata
aaagaacaacttgcacaaagtatgtttgatcacattccagttggtgttgggtctaaagga
attataccaatgaacgcacgagatttagaagaggcattagaaatgggaatggattggtct
ttgagggaaggatacatttgggctgaagataaggaacactgcgaagaatatggacgtatg
cttaatgctgatccatccaaagtatcgatgagagctaagaaacgtggacttcctcaatta
ggtacattaggagctggaaatcattatgcagagattcaggtagtagatgaaatatatgat
aagtgggctgcatgtaaaatgggtattgaagaaaaaggacaaatttgtgttatgattcac
tcaggaagcagaggatttggccatcaagttgctacagatgcacttgtgcaaatggaaaaa
gctatgaagcgtgataacatagaaaccaatgataggcaacttgcatgtgctcacattaaa
tctcaagaaggccaagattacttaaaagcgatggcagctgctgctaattttgcatgggtt
aacagaagttctatgacatttcttacccgacaggcatttgcaaaacagttcaattcatct
cctgatgacttagatatgcatgttatttatgatgtttctcacaatattgctaaaatagaa
gagcacatggttgatggaaaacaaaaaacacttttagttcatagaaagggatcaacaaga
gcatttccaccgcatcatcctttgattcctgtggattatcaattaacaggccaaccagtt
ttaattggtggtactatggggacctgcagttatgttctgactggtacagaacagggtatg
aaagaaacgtttggatcgacgtgtcatggcgctggtcgtgctctctcaagagcaaaatca
cgtagaaatttggattataagcaagttctagaaaaattagaagagttaggcatatcaatt
cgagttgcttcaccgaaattggtcatggaagaagcgccagaatcctataaaaatgtaaca
gacgttgttaatacctgtcacgcagctggaatctccaagaaatgcattaaacttcgacca
attgcggtcattaaaggataa
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