Camponotus floridanus (Florida carpenter ant): 105250620
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Entry
105250620 CDS
T03919
Name
(RefSeq) collagen alpha-1(I) chain
KO
K19719
collagen type II alpha
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo04512
ECM-receptor interaction
cfo04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105250620
04518 Integrin signaling
105250620
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cfo00536
]
105250620
Glycosaminoglycan binding proteins [BR:
cfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105250620
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
105250620
NCBI-ProteinID:
XP_025265114
LinkDB
All DBs
Position
Unknown
AA seq
1507 aa
AA seq
DB search
MRQQILKLVTGFLVVQLLLLSNQVNAVKNRPRKQRSRSEKPQAQQPDSDYNYDYYENYDY
EEKNETTTTLSPLVVPSSSIRISGWSESPIESTASSYRPEKPTDLPAPTTTLFYDRDLEQ
TNVTSEQNHLVSSTEILPGESNLYNSVAGPRGEPGRPGDAGRPGDVGYPGQPGSPGIPGP
PGPPGNVPDVSLYYQQLALSQANQDKGPTGAAAPLYGPEAYPYIQAQVGPIGPRGHPGPP
GAPGPQGFQGTRGEAGEPGSPGSPGAPGSRGLPGLPGKDGINGEDGEIGSPGSPGPAGLR
GLPGMPGLPGIKGHRGFPGLDGAKGEQGVSGEKGSTGAPGPMGPIGPMGPAGPRGERGRE
GSSGPPGLRGPDGIIGPPGQPGAVGKPGPPGFPGIPGSKGDQGSQGPKGSQGLQGPRGES
GRPGQPGETGPQGAQGKDGSPGEKGATGAIGPVGLPGFPGPRGQLGESGNPGIPGAKGAS
GLPGERGFKGDSGVKGDTGMPGPRGLPGAPGNEGKRGKRGMRGPIGATGPPGERGAPGMR
GLPGPDGPVGPQGQIGDRGPVGAIGPKGAVGDLGRPGPPGLQGLRGLMGRPGASGKPGNP
GERGIQGADGKSGEQGPPGSQGLPGPLGAPGERGYPGEPGKDGEPGNPGSPGPRGDTGKE
GPPGIQGPPGPAGNDGARGSPGSVGPRGFQGVPGATGNPGVPGKDGEAGIQGPPGSPGPI
GNRGERGIPGERGFMGFPGPMGPKGETGTQGADGLTGLPGLKGERGSTGAPGLLGLPGAR
GLPGEPGQKGERGALGPVGPEGPPGHIGERGLQGEIGPPGPPGEPAERGDPGPPGFIGEP
GAAGKPGDTGPQGLQGLPGFPGQQGLIGLPGLKGDRGYPGLKGEQGNPGLSGSPGEAGSP
GLIGLTGAKGIRGESGARGEPGLMGPPGIPGHVGPAGSPGNIGSPGAPGLPGAKGDAGDL
GRPGNPGPIGNPGLPGMDGNKGESGSPGPQGLDGLQGPQGLSGERGLPGLPGSPGSIGNR
GLHGAPGETGQPGKPGTEGPPGSPGLVGPPGSPGHVGEIGPEGPIGKPGPPGIGGRPGDK
GPPGIPGAAGPSGPPGLPGPLGPTGPTGLAGERGPKGEAGPQGVEGPQGPRGKPGPIGLE
GTKGDRGEEGPKGAKGHRGFNGLQGLPGSPGLPGEKGMPGLSGLSGKDGEPGIRGSPGRE
GNPGLIGPAGNPGPRGPPGEEGRHGSPGLPGPPGPPGPPGEIGFGYDTAALAAFIGQGQT
EGPDPLGDEPSRIFSKDITEKERRELLIKAYENLKSSFHKLMKPDGEKNSPAKTCRDLFV
AYPEKLSGKYWIDPNEGDVRDAILVYCDAEKHATCILPSPVHSPEITHITDQQETWLSEI
DDGMKITYKADNNQINFLQLLSKHAQQNITYHCKNSVAYFDYERKTYRRGLKLLAWNDVE
LTPRGNQRLTYEMITDECRLYQNHWGKTVISYETDKPIRLPILDVALRDIGKPEQSFSVE
IGAACYQ
NT seq
4524 nt
NT seq
+upstream
nt +downstream
nt
atgaggcagcagatcctaaagctggtcacggggttcctcgtggtccagctgctgctgcta
tcaaatcaagtaaacgctgtgaaaaatcgaccaagaaagcaacggtccaggtcagaaaaa
ccgcaagcgcaacaacctgatagcgattacaattacgattattacgaaaactatgactat
gaagaaaaaaacgagaccacaacaacattgtcacctcttgtagtaccatcatctagcata
cgaatttcgggatggtccgaatcaccgatagaaagtacagcatcctcatacagaccagaa
aaacctacagatttgccagctccaacgacaactttattttatgatcgtgatttagaacag
actaatgtcacatctgagcagaatcatttagtttcgtccacggaaattttaccgggtgaa
agtaatttatacaattctgtggctggtccacgaggtgaacctggtcgacctggagatgct
ggtcgtccgggtgatgtaggatatcctggacaacctggaagtcctggaattccaggacca
cctggtcctccaggaaatgtacctgatgtatctctatattatcaacaattggctttgtct
caagcgaatcaagataaaggcccaacaggtgcagctgctccattgtatggaccagaagca
tatccttatattcaagcacaagtaggtccaataggcccgcgaggtcatccaggtccacct
ggtgctccaggtcctcaaggtttccaaggtacacgcggtgaagctggtgagccgggatct
ccaggttctcctggtgcgccaggttctcgaggtttaccaggattacccggaaaagatggt
atcaatggagaagatggtgaaatcggttcaccaggatcacctggtcccgctggactgcgt
ggtcttcccggaatgccagggcttccaggaataaaaggtcatcgtggttttccgggttta
gacggagcaaaaggtgagcaaggagtttctggtgaaaaaggatctacaggcgcaccagga
ccaatgggcccgataggtccaatgggcccagcaggaccacgtggtgagagaggtagagaa
ggttcatctggccctcctggtttgagaggtcctgatggaattattggaccacccgggcaa
cccggtgctgtgggtaaacctggcccaccaggatttccaggtattcctggatctaaaggt
gatcaaggatcacaaggaccgaaaggaagtcaaggtttacaaggcccgcgaggcgaaagt
ggccgcccaggacagcctggcgaaacaggtccgcagggtgctcaaggcaaagatgggagt
cctggcgagaaaggagctacgggagcgataggacctgttggtttacctggatttccgggt
cctcgaggtcaactcggagaatcaggcaaccctggtattcctggagccaaaggagcatct
ggtcttcctggggaaagaggttttaaaggtgactccggcgtgaaaggtgatacaggaatg
cctggtccacgtggacttccgggagctcctgggaatgaaggcaagagaggcaaaagagga
atgcgtggaccgattggcgccacaggacctcctggagaacgcggtgcgcctggaatgcgt
ggacttcctggtccagatggtcctgtcggacctcaagggcaaattggtgatcgtggtcca
gtaggagctattgggccgaaaggagccgttggagatcttgggcgacctgggccaccagga
ttacaaggtttgcgcggtttgatgggtagaccaggagcttctggaaaaccaggcaatcct
ggcgaacgtggaattcaaggtgcagatggtaaatccggagaacaaggtccacctggatca
caaggtctgccaggaccattaggggcgccaggagagagaggctatcccggagaacctgga
aaagatggtgagcctggtaacccgggatcgcccggtccaagaggagatactggtaaagaa
ggacctccgggaatacaaggtccaccaggtccagcaggaaacgacggtgcgcgtggttct
ccagggtcagttggacccagaggttttcaaggtgtcccaggtgccaccggtaatccaggt
gttccaggtaaggatggagaagcagggatacaaggacctcctggttcaccaggaccaatc
ggcaacagaggcgagcgaggaattccgggagaaagaggattcatgggatttccaggacct
atgggtccgaaaggagaaactggaactcaaggcgctgatggtttaactggcttaccagga
cttaaaggagaaagaggaagtaccggtgcaccgggattgttaggacttcctggtgcgaga
ggattacccggagaacctggacaaaaaggagaaagaggagcgctcggacctgtgggtcct
gaaggtccaccaggacatattggagaacgcggtttacaaggagaaattggacctcccgga
cctcctggagaaccagcggaacgaggtgatccgggtccacctggttttattggcgagcca
ggagcagctggcaagccaggggatacaggtcctcaaggattgcaaggcttaccgggtttc
ccaggccaacaaggattaattggacttcctggtttaaagggtgatcgtggatatccgggt
ttaaagggagagcaaggaaatccggggctatctggcagtcctggcgaagctggatcacct
ggacttattggacttaccggtgctaaaggaattagaggtgaatcgggtgcgcgaggtgaa
cctggcttgatgggaccacctggtattccgggacatgttggtccagcgggttcaccaggg
aatataggatcacctggtgctccaggattgcctggtgccaagggtgacgcgggcgatctt
ggacgtcctggaaatccaggtccgattggcaatcctggtctacccggaatggatggaaat
aaaggtgaaagtggatctccaggtcctcaaggactggacggtcttcagggacctcaaggt
ttatccggtgagagaggcttaccaggcctacccggctctcccggttctataggaaataga
ggattacatggagctcccggtgaaacaggacaacccggaaaaccaggtacagaaggtcca
cctggatctcctggattagtaggccctcctggctcgcctggtcatgtaggagagatagga
ccagaaggaccaattggaaaaccaggaccaccaggaataggtggtcgacctggtgataag
ggaccacccggaatacctggtgcagcaggtccatctggcccacccggactaccaggacca
cttggacctacaggacctactggattagctggagaacgtggcccgaaaggcgaagcggga
ccgcaaggagtagaaggtccacagggtccccgaggaaaacccggtccgataggtctcgag
ggtacaaagggcgatcgcggagaagagggaccgaaaggagcgaaaggacatcgcggattc
aacggtttgcaaggattgcccggatctcctggtttaccaggtgagaaaggtatgcctggt
ctatcaggactctccggcaaagacggggagccaggtattagaggtagtcctggacgagaa
ggtaacccaggacttattgggcctgcgggaaatcctggaccaaggggtccacctggagaa
gaaggtcgtcatggctctccaggtcttccaggacctcccggaccgcccggtcctcctgga
gaaattggttttggttacgataccgcagctctagcagcatttataggacaaggtcaaact
gaaggaccagatccactcggtgatgaaccatcgagaatatttagtaaagatattactgaa
aaagaacgaagagaattgcttataaaagcatatgaaaatctaaagtcatcattccacaaa
ttgatgaagccagatggtgaaaaaaattcgccggccaaaacctgtcgagatctattcgtt
gcctatccggagaaattatctggcaaatattggatcgatccaaacgaaggagatgtccga
gatgcaattttagtatactgtgatgctgagaaacatgcaacttgcattttaccgagtccc
gtccattcaccagaaatcactcacatcactgatcaacaggagacctggttgagtgagata
gacgacggcatgaagattacatacaaagcggataacaatcaaatcaatttcttgcaattg
ctctcgaaacatgcgcaacagaatattacgtatcattgtaaaaacagcgtcgcttacttt
gattacgagcgaaaaacatacagaaggggtttaaagcttttagcttggaacgatgttgaa
ttgacaccacgtggcaatcagcgtcttacatatgagatgataacagatgaatgcaggctt
tatcaaaaccattggggtaaaactgtgatttcatatgagacggacaagcctataagactc
cctatcttagacgtggctttacgagatatcgggaaacctgaacaaagcttctccgttgag
atcggtgcggcttgttatcaataa
DBGET
integrated database retrieval system
