Camponotus floridanus (Florida carpenter ant): 105252882
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Entry
105252882 CDS
T03919
Name
(RefSeq) CCR4-NOT transcription complex subunit 10 isoform X2
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105252882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfo03019
]
105252882
Messenger RNA biogenesis [BR:
cfo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105252882
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
ANAPC3
TPR_1
TPR_14
TPR_NUP160_120_M
TPR_8
SRP_TPR_like
Motif
Other DBs
NCBI-GeneID:
105252882
NCBI-ProteinID:
XP_011258807
LinkDB
All DBs
Position
Unknown
AA seq
741 aa
AA seq
DB search
MMNEILEVQNKDSVISEQERDLAQNALSEFHKGSYVLCSSYLNKLENLRPMDLKVMHNKV
VVEYYKSDLKKTELMRKSLIAICGQMSADSSETIDDVEKCVMRYNQAVLLYHTKQYNAAL
QIMTKLFAFIEPMEETLANKVCLLLIELYIIMEQPDAALSILNYVESQYISIDGSKVTSV
DKDGIIKSKIKEQKEQKRDTNDAVTDVFKIKLLKCKARIYLLTHQLKLCKKEWKTIVSLG
TLANTSTIFLKANLEYLRGNYKKAMRLLNSATIENLDFKLCGESSAVLYYNNIACLYLAM
GKPNLACFYLKKALHENKLAVESVQVKDTDPLFSQPLYTLGGNKHYELMYSLGVSLLHTG
QASKAFDCFTEAAQRLHNNSKLWLRMAECCIYNHKYSNQVDFNIPKRRKDLVQKVVGSGV
HKKIILAASLSKDVNYHSEGLSYAIPQPTLEFGSLCLKNALFLLPNNNEPNVSQTAIVNA
QTATSTLPLTTSHNLGMQHATLISQATIIESFNLKISVLTASAYVSLCLGDYILSLEHAK
TLLSFNKLPGAYKLLGNLYAAESLIFMDKISEALEYLKLENLQDLHTFISMPEIQEKDKE
KVEEVMAKPTKAWYPTTVSTGIAVLRYNLAVAYAIRGELDKSGEILKQVWMSKESDCDIP
IQVIMLALYIELQLVETKVIIPSLKAIQFDATLTSRDTKSFHFDDLRFVLHGHICVTPAA
LDLYIVMPLDTVYSLYVRIRA
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacgaaattttggaagtacagaacaaggactctgtcataagcgaacaagaacgc
gatttagcacaaaatgcattgtcagaatttcataaaggctcctatgttttatgctcatca
tacttgaataagttggaaaaccttcgccctatggatcttaaagttatgcataacaaagtt
gttgtggagtattataaaagtgacttgaaaaaaactgagttgatgcgtaaaagtttaatt
gccatatgtggccaaatgtcagcagattctagtgaaactatagatgatgttgaaaagtgt
gttatgagatataaccaagccgttttattgtatcacactaagcaatataatgctgcgctt
caaatcatgaccaaactatttgctttcatcgagccaatggaagaaactttagccaacaaa
gtttgcctgttactcattgagctatatataataatggaacaaccggatgcagctctgtca
atattaaattatgtggagagtcagtatatatctatcgatggttctaaagtgacatccgtt
gacaaggatggaataataaaatctaaaataaaggagcaaaaagaacaaaagagagatacc
aatgatgcagtaacagatgtattcaaaattaaactcttaaaatgtaaagcaagaatatat
cttttgactcatcaattgaaactttgtaaaaaagagtggaagacaattgtttcactgggc
acattggcgaatacatcaacaatttttttaaaggctaatttggagtatttacgaggaaat
tacaagaaggcaatgcgattgctgaattctgcaacaatagaaaatttagatttcaaatta
tgtggggaatcttcggccgttttatattataataatatagcatgcctctatcttgcaatg
ggcaaaccaaatttagcttgtttttatcttaaaaaagctctacatgaaaacaaattagca
gtcgagagcgtgcaagtcaaagacactgatcctttgttttctcagccgctatacacactt
ggtggcaataaacattacgagctaatgtacagtttaggtgtatcattgttgcatactggt
caagcgtcaaaagctttcgattgctttacagaagcagcacaaagattacacaataattcc
aaactttggcttagaatggcagaatgttgtatctataatcataaatattcaaatcaagtg
gattttaatattccgaagcgacgtaaagatttggtacagaaagttgtaggttctggtgtt
cataagaaaatcattttggctgcatctctttcaaaagatgttaattatcattcagaaggc
ctatcctatgctataccacagccaacattagagtttggatcattatgcctgaagaatgca
ttatttttattaccaaataataatgagccgaatgtgtctcaaacagccatagtaaatgca
cagacagcgacaagtacactaccattaacgactagtcacaacttgggtatgcagcatgca
acattaatatcccaagcaacaattattgaatcttttaatttaaaaattagtgtattaact
gctagtgcatatgtttctttgtgtcttggagattatatactgtcccttgaacatgcaaag
actctactaagttttaataagctgcctggagcatataaactcttaggcaatttatatgct
gcagaaagtctgatctttatggataaaattagcgaagcactcgagtatctcaagctggaa
aatctacaagacttgcatacatttatatcaatgccagagattcaagaaaaagataaagaa
aaagtggaagaagttatggcaaagcctacaaaagcatggtatcctactacagtttctaca
ggcattgctgtattacgttacaacttggctgtggcttatgccatacgaggtgaattagat
aaatctggagaaatcttaaaacaagtatggatgtcaaaagaatcagattgtgatatacct
atacaagtgataatgttggctttatacatagaattacaattggttgagaccaaggttatc
atcccgtctttgaaagcaatccagtttgatgcgacactgacgagccgagataccaaatcc
tttcatttcgacgacttgcgtttcgtccttcacggccatatatgcgtgacaccagccgca
cttgacctatatattgttatgccattggacacagtgtatagtttatatgtgcgaatacgc
gcataa
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