KEGG   Camponotus floridanus (Florida carpenter ant): 105253119
Entry
105253119         CDS       T03919                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
cfo  Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cfo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105253119
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:cfo03041]
    105253119
Spliceosome [BR:cfo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    105253119
 Complex C
   U5 SnRNP specific factors
    105253119
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 EIF3I Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_IFT122_1st Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_SCAP NBCH_WD40 Beta-prop_SPT8 eIF2A Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_IFT140_1st WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_RIG_1st Ge1_WD40 Beta-prop_WDR35_TULP_N WD_LRWD1
Other DBs
NCBI-GeneID: 105253119
NCBI-ProteinID: XP_011259238
UniProt: E2AJJ7
LinkDB
Position
Unknown
AA seq 349 aa
MPILDKRKGDDILALVPASKRTKNEIVFSSREKAVVQSGPPRTSSLMSMIMLLEGHQGDI
FSLEFHPEGQYLASTGFDRQIFIWNVYGECENIGIMTGHSGAVMELHFSPDGNHLYTAST
DMTLGLWDIVAGTRIKKLKGHTSFVNSVSGARRGPTLLCSGSDDSTIRIWDPRKRGQCHT
LNNTYQVTAVTFNDTAEQVISGGIDNDVKVWDLRKNAVLYKLKGHTDTITGLSLSPDGSY
ILSNAMDNTLKIWDVRPFAPYERCVKILSGHQHNFEKNLLRCAWSPDGSKVSAGSSDRFH
YIWDTTSRRILYKLPGHNGSVNDIDFHPKEPIVCSGSSDKQIYMGEIET
NT seq 1050 nt   +upstreamnt  +downstreamnt
atgccgattctggataaaagaaaaggagatgatatcttggcattggtccctgcttcgaaa
agaaccaagaatgaaatcgttttcagcagcagagaaaaggcggttgtgcaaagcggtcca
ccgcgaacatcctccttaatgtcgatgataatgttgctcgagggacaccaaggagatatc
ttttctttggaatttcatccggaaggacagtatctggcatccacgggattcgatcgacaa
atcttcatctggaatgtttacggagaatgcgagaatattggcatcatgactggacacagt
ggtgctgtgatggaattacacttcagtccagatggcaatcacttgtacacagctagcaca
gacatgacactgggtttgtgggacatagtagctggaacacggatcaaaaagttgaagggc
catacttcgtttgtaaattctgtgtcaggtgcgcgaagaggacccacgctactctgctcg
ggtagtgatgatagtacgatacgtatttgggatcccaggaagcggggtcagtgccacaca
ttaaacaatacatatcaggtaactgcggtaacgtttaacgatacggcggagcaagtaatc
agcggcggtatcgataatgatgtaaaggtatgggatcttcgaaaaaatgcggtgctttac
aaattgaaaggacacaccgataccattactggattgagtctcagtcccgacggatcttat
atactttccaacgctatggataacacgctgaagatatgggatgtacgaccgtttgcacct
tatgaacgctgcgtaaaaatactgtccggacatcagcataactttgaaaagaatcttctg
agatgtgcttggtcaccggatggcagcaaagtctcggctggctcctcggatcgatttcat
tatatttgggataccacaagtcgtagaatattatacaaattgccgggacacaacggatct
gtgaatgacattgatttccatccaaaagaacctatagtgtgctcgggatctagcgacaag
caaatatatatgggcgagattgaaacttaa

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