Camponotus floridanus (Florida carpenter ant): 105254668
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Entry
105254668 CDS
T03919
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo04382
Cornified envelope formation
cfo04512
ECM-receptor interaction
cfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105254668
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105254668
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105254668
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cfo04147
]
105254668
00536 Glycosaminoglycan binding proteins [BR:
cfo00536
]
105254668
Exosome [BR:
cfo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105254668
Glycosaminoglycan binding proteins [BR:
cfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105254668
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105254668
NCBI-ProteinID:
XP_011261796
LinkDB
All DBs
Position
Unknown
AA seq
1847 aa
AA seq
DB search
MRPRAPTTSTNTGDEDRGISRLVSPLVLRITCVLALLVLAATWIPVAEAVKCKDSYKCNC
TGVKGLRGISGISGPQGTEGLPGDIGPDGPIGPKGEKGAGGEPGATGEKGHRGDEGIRGF
VGVPGLSGNPGILGVVGPDGLDGCNGTDGRAGAPGMPGVFGPRGVIGATGDYGPPGEPGD
GGINSVGAKGIRGNPGINGLEGYQGQRGFTGEMGYPGDTGDFGFSGPPGLPGMQGDRGDT
VYGLKGPLGEQGDRGEPGSPGKDEYKKKEKSTPVKGPPGPKGMKGDYGERNRKGEMGAKG
PQGRPGFLGIKGVKGEQGDDGPRGKQGIEGPPGPAGEKGEKGAPGFAGLPGTDGFDGEPG
EEGNRGPPGRQGAEGELGQYIPELDEIIAGNIGIQGDLGPPGEPGESGTPGFPGKVGFIG
PPGPPGPPGIPGLSGVKGSSIKGEQGDDGLSGPMGPQGSPGLPGLSGIVGAKGFPGVTII
GPSGPDGNPGLPGLSGPPGDRGDPGPPGEKGFPGKGIRIRGPPGERGLPGTPGIPGPDGW
PGLFGTKGGKGIRGDDCGVCAPGLPGEKGERGESGLDGYPGASGFPGLPGPRGFKGIQGK
RGSLGPAGLEGDSGRSGIAGIQGPKGEPGKIFFPRDEQIVSPPGDVGEKGLPGPEGLRGL
RGQPGPGGDTGAPGPKGEKGEHGSPGLSGRDGTPGWDGIPGEKGEDASVPIEVLRGDPGY
PGEPGIKGIQGDTGNKGEPGEASEYVADSKGDKGYKGAIGSPGEFGFKGFQGHVGDEGLP
GLPGEPGSPGISRQGPSGLKGYPGMPGEQGLRGTPGSPGSQGPIGFAGRVGNKGERGDPG
TNLTYGEIGERGWYGPKGDFGDPGPPGLRGRPGEDGPKGVRGAKGAPGYEGLPGLEGAKG
QRGDSIQGDRGFPGILGLPGMSGRIGDVGVRGPDGPSGFDGMKGLKGEVGFIGRRGDDGD
TGLQGYQGMYGRQGLPGAPGEKGEIGENGEPGPLGWPGFDGIDGAPGAKGESGDNGIPGT
PGLRGPPGFKGIIGDTGFEGLWGPPGENSFSGPQGDIGEPGFMGEIGPPGLAGFDGRPGL
PGEPGVSTDGFNGLPGQKGEPGFDGYDGSVGPKGEIGDMGPDGFKGEQGAQGFPGRPGLP
GIPGKYGVKGERGPAGPLGFDGLKGKRGLDGDPGIMGRPGMPGEPGVRGAPGILGAPGPK
GYVGEPGLPSYAFAEKGDYGNRGYDGFIGMKGEQGESGYIGLPGRKGQVGDRGYPGPVGF
PGLSGFPGLPGDQGPRGAPGLPGEFPEPGEIGRAGLDGMPGISGRPGQKGAPGEYGPNGP
KGISGDIGYSFHGPKGITGDPGARGFVGTPGMPGLEGLQGFPGAPGPKGFRGEPGISGSS
TKGQPGEPGWPGLDGRLGPKGMKGDSGLPGFDGQPGLKGERGEPGEPGLPGLPGPDGPQG
PKGEAGLNPFPPFPRQGPPGDIGVPGLPGFPGLQGMMGEPGKDGLPGRVGERGMIGISGP
SGPDGKDGPPGYQGPPGITGRQGQPGFPGAPGAPAPNGIGPSDRGFYFARHSQSEMIPIC
PRDTVKLWEGFSLLHTMGNGRPYAQDLGAAGSCIKKFSTMPFLFCNLNNVCDYANRNDYS
YWLSTTEPMPMMMTPIPAPEVGRYISRCSVCTAPTRVIAVHSQSMAIPQCPGGWKEIWVG
YSFLMHRDAGADGGGQSLVSPGSCLEEFRVRPFIECRGLGTCNFFATATSYWLATIRDDE
MFRKPLQQTLKADHTSRVSRCAVCIRQRVSEDPYSRTAVLKPFTSNNERAPNNISGRYPA
GPRRYPFVPPNRERYLSHRRPPPNHYRRRDRVRGRHGERPIESSNTL
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atgcggcccagggccccgacaacgtcaacaaacaccggcgacgaggaccgcggcatctcg
cggctggtctccccgctcgtcctgcgaatcacctgcgtccttgccctactggtgctcgcc
gccacatggataccggtcgccgaggctgtgaagtgcaaagattcgtacaaatgcaattgt
accggagtaaaagggctgagagggatttctggaatatctgggcctcaaggaacagaaggg
ctcccgggtgacatcggacctgatggacccatcggacctaaaggcgagaaaggagcagga
ggagaacctggagcaaccggcgaaaaggggcatcgaggggacgaaggtatacgaggattt
gtgggagtccctggactttccggtaatcctggtatactcggtgtggtgggtccggacgga
ctggacggatgcaacgggacggatggtcgagccggcgcacctggtatgccaggagttttc
ggaccgcgcggtgtgatcggagctacgggagattatggtcctccgggagagcctggtgac
ggaggtatcaattcagtcggtgccaagggtattcgcgggaatcccggtatcaacggactg
gagggttatcaaggacaaaggggtttcaccggtgaaatgggctatccaggtgatacgggc
gacttcggtttctcaggtcctcctggattgccaggtatgcaaggtgatcgcggtgacact
gtttacggtttgaagggtccacttggtgaacaaggagacaggggagagcctggttcacca
ggtaaggatgaatacaagaagaaagagaaatcgacgcctgtgaaaggtccaccaggaccg
aaaggcatgaagggtgattatggtgaacgaaatcgcaaaggagagatgggtgccaaaggt
ccacagggccgaccaggttttttgggcatcaaaggtgtgaaaggtgagcaaggtgacgat
gggccaagaggtaaacaaggtatcgagggcccaccaggaccggctggtgagaaaggagag
aaaggagctccaggtttcgctggattgcctggtacggatggattcgatggtgaaccagga
gaagaaggtaatcgcggtccacctggcagacaaggagccgaaggagaacttggacagtat
attccggaacttgatgaaataatcgccggaaatatcggaattcaaggagatcttggtcct
cctggtgaaccaggtgaatcaggaacaccaggttttccaggaaaggtcggttttatagga
ccaccaggaccaccaggaccacctggtattcctggtttatcgggagtgaagggttcgtcc
ataaaaggagaacaaggagatgatggcttatcgggacccatgggacctcagggatctccc
ggactacccggtttatccggaattgtaggagccaagggatttccaggcgtaacgataatt
ggaccatcaggaccagacggcaatccgggtctgccaggattatcaggtccacctggcgat
cgcggtgatcctggtcctccaggagagaaaggtttccccgggaaaggtataagaattcgt
ggaccgcctggagaacgaggtttgcccggaacaccgggtattcctggtcccgatggttgg
cctggtttatttggcactaaaggtggaaagggtattcgaggagatgattgtggcgtatgt
gcaccaggtctacccggggagaaaggagaacgcggtgaatctggcttagacggatatcct
ggagcttcgggatttcctggattaccaggtcctcgaggattcaagggaatacaagggaag
cgaggttcactaggaccagcgggacttgaaggtgacagtggaagatctggtattgcggga
atacaaggacctaaaggagaaccgggaaagatattcttcccgagagacgagcagattgtg
agtccaccgggtgatgttggtgaaaaaggtttgcccggtcccgaaggactcagaggtcta
cgaggacaaccgggacctggtggtgacacaggtgcaccaggaccaaaaggagaaaagggt
gaacatggctcacctggattatcaggaagggatggcacgccgggatgggatggcatacct
ggtgaaaaaggtgaggatgcttcggtaccaattgaggttttacgcggagatccaggctat
ccgggagagcccggaataaaaggaatacaaggagataccggtaacaagggagaacctggc
gaagcctcagaatacgtcgcagacagtaaaggtgacaagggctacaaaggtgctatagga
tctcctggagaatttggtttcaaaggcttccaaggacatgttggtgatgaaggtctacca
ggattacctggtgaaccgggttctccaggtatttcacggcaaggtcctagtggtttgaaa
ggatatcccggaatgccgggagagcaaggacttcgtggaacaccaggttcgcctggatcg
caaggaccaattggttttgcaggtcgcgttggtaacaaaggtgaacgaggagatccaggc
acaaatctaacttatggcgaaattggagaacgcggttggtatggtccaaaaggtgatttt
ggtgatcctggtcctccaggattgcgtggccgaccaggagaggatggtccaaagggtgtc
agaggcgctaaaggagctcctggttatgaaggactgcctggacttgaaggagctaaaggt
caacgtggagatagtatacaaggtgatcgaggttttccgggtatacttggcctgcctgga
atgtccggaagaattggagacgtcggtgttcgtggtcccgatggtccttctggctttgac
ggaatgaagggtttaaagggagaagttggttttattggacgacgtggtgatgacggtgac
accgggcttcagggatatcaaggaatgtacggaagacagggtttaccgggcgctccagga
gaaaaaggagaaatcggcgagaatggtgagccaggccccctcggctggcctggtttcgat
ggtatagatggagcacctggtgctaaaggagaatcaggagataatggaattcctggaaca
ccaggactgagagggccacctggattcaagggtattattggcgacaccggtttcgaagga
ctttggggtcctcctggcgaaaattcctttagtggccctcaaggtgatattggtgaacct
ggttttatgggagaaattgggccacccggtttagctggattcgatggacgaccaggattg
ccgggagaaccgggagtatcaactgatggtttcaatggtttgccaggacagaaaggtgaa
cctggattcgatggatacgatggtagcgtgggaccaaaaggagaaattggtgacatgggt
cctgatggattcaagggtgaacaaggcgctcagggtttcccaggaaggccaggcttgcct
ggaatacctggtaaatatggcgtgaagggtgaaagaggtccggctggacctcttggattc
gatggattgaaaggaaaacgcggtctcgatggtgatcccggtataatgggtagaccagga
atgccgggtgaaccgggtgtaagaggtgccccaggtatcttgggtgctcctggaccgaaa
ggttacgtgggcgaacctggcttaccatcttacgcattcgcggaaaagggtgattacggt
aatcgaggttacgatggttttattggtatgaaaggagaacaaggtgaatcaggatatatc
ggactgcccggtcgtaaaggtcaagttggagatcgaggatatccgggtcccgttggtttc
ccaggattatctggcttccctggtctaccaggtgatcaagggcctcgtggagctccaggc
ttgcctggtgaattccccgaacccggtgaaattggtcgcgctggtctagatggtatgcct
ggtatctcaggtcgtcccggacaaaaaggagcacctggtgaatatggtccgaatggacct
aaaggaatttctggtgacataggctatagctttcatggtcctaaaggaattacgggagac
ccaggtgctagaggattcgtcggcacaccaggcatgccaggtttggaaggattacaaggc
ttccccggagcaccagggccgaaaggtttccgtggagagccgggaatatctgggagtagc
acgaaaggacaacccggtgaacctggatggcctggactagatggtcgactaggaccaaag
ggaatgaaaggtgattccggtctacctggctttgacggacaaccaggactaaaaggagaa
agaggagaacctggtgaacctggtctacctggattgcctggtcctgacggtccacaggga
ccgaaaggagaagctggcttaaatcctttcccgcctttcccgagacaaggacctcctggt
gatataggagttcccggattaccaggcttccctggactacagggaatgatgggtgaacct
ggcaaagacggtctgcctggacgagtaggtgaaagaggtatgatcggtatttctggacca
tcagggccggatggcaaagatggacctcccggatatcaaggtccacctggaataaccgga
cgacaaggacaaccaggttttcctggcgcacctggtgcacctgcgccaaacgggattggt
ccaagcgacagaggtttctattttgctcgtcactcacaatcggaaatgataccaatatgt
ccaagagataccgtaaaattgtgggaaggattttctttattacataccatgggtaatgga
cggccatacgctcaagatctcggtgctgctggcagttgcatcaaaaagttctctactatg
cccttcctattctgcaatttgaacaatgtatgcgattacgccaatcgtaacgactatagc
tattggcttagcacaaccgagcccatgccaatgatgatgacgccaataccggcaccggaa
gttggtagatacatatcgagatgctctgtgtgcacagcaccgaccagagtaatagctgtc
catagtcaatccatggccataccccagtgtccgggtggctggaaggaaatctgggtcgga
tacagtttcctcatgcatagagacgcaggcgccgatggtggtggtcaatctctagtctca
cccggatcctgtttggaggagttccgcgtcaggccgttcatcgagtgccgtggcctcggc
acctgtaacttcttcgccaccgcgacatcatattggctagcaaccatccgtgacgacgag
atgttccgcaaaccgctgcaacagacgctcaaggccgaccatacatcccgagtgagccgc
tgcgctgtgtgcatccgccaacgcgtcagcgaggatccttacagcaggacggcggtcctg
aaacccttcacatcaaataacgaacgtgctcccaacaatatttctgggcgctatccagcc
gggccacgccgttatccgttcgtaccgcccaatcgcgaaaggtatctcagccacaggcgc
ccaccacccaatcactaccgtagaagagatcgcgtgcgcggcaggcacggtgaacgaccg
atagaatcgtccaacactctgtag
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integrated database retrieval system
