Camponotus floridanus (Florida carpenter ant): 105254668
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Entry
105254668 CDS
T03919
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo04512
ECM-receptor interaction
cfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105254668
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105254668
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cfo04147
]
105254668
00536 Glycosaminoglycan binding proteins [BR:
cfo00536
]
105254668
Exosome [BR:
cfo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105254668
Glycosaminoglycan binding proteins [BR:
cfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105254668
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105254668
NCBI-ProteinID:
XP_011261796
LinkDB
All DBs
Position
Unknown
AA seq
1847 aa
AA seq
DB search
MRPRAPTTSTNTGDEDRGISRLVSPLVLRITCVLALLVLAATWIPVAEAVKCKDSYKCNC
TGVKGLRGISGISGPQGTEGLPGDIGPDGPIGPKGEKGAGGEPGATGEKGHRGDEGIRGF
VGVPGLSGNPGILGVVGPDGLDGCNGTDGRAGAPGMPGVFGPRGVIGATGDYGPPGEPGD
GGINSVGAKGIRGNPGINGLEGYQGQRGFTGEMGYPGDTGDFGFSGPPGLPGMQGDRGDT
VYGLKGPLGEQGDRGEPGSPGKDEYKKKEKSTPVKGPPGPKGMKGDYGERNRKGEMGAKG
PQGRPGFLGIKGVKGEQGDDGPRGKQGIEGPPGPAGEKGEKGAPGFAGLPGTDGFDGEPG
EEGNRGPPGRQGAEGELGQYIPELDEIIAGNIGIQGDLGPPGEPGESGTPGFPGKVGFIG
PPGPPGPPGIPGLSGVKGSSIKGEQGDDGLSGPMGPQGSPGLPGLSGIVGAKGFPGVTII
GPSGPDGNPGLPGLSGPPGDRGDPGPPGEKGFPGKGIRIRGPPGERGLPGTPGIPGPDGW
PGLFGTKGGKGIRGDDCGVCAPGLPGEKGERGESGLDGYPGASGFPGLPGPRGFKGIQGK
RGSLGPAGLEGDSGRSGIAGIQGPKGEPGKIFFPRDEQIVSPPGDVGEKGLPGPEGLRGL
RGQPGPGGDTGAPGPKGEKGEHGSPGLSGRDGTPGWDGIPGEKGEDASVPIEVLRGDPGY
PGEPGIKGIQGDTGNKGEPGEASEYVADSKGDKGYKGAIGSPGEFGFKGFQGHVGDEGLP
GLPGEPGSPGISRQGPSGLKGYPGMPGEQGLRGTPGSPGSQGPIGFAGRVGNKGERGDPG
TNLTYGEIGERGWYGPKGDFGDPGPPGLRGRPGEDGPKGVRGAKGAPGYEGLPGLEGAKG
QRGDSIQGDRGFPGILGLPGMSGRIGDVGVRGPDGPSGFDGMKGLKGEVGFIGRRGDDGD
TGLQGYQGMYGRQGLPGAPGEKGEIGENGEPGPLGWPGFDGIDGAPGAKGESGDNGIPGT
PGLRGPPGFKGIIGDTGFEGLWGPPGENSFSGPQGDIGEPGFMGEIGPPGLAGFDGRPGL
PGEPGVSTDGFNGLPGQKGEPGFDGYDGSVGPKGEIGDMGPDGFKGEQGAQGFPGRPGLP
GIPGKYGVKGERGPAGPLGFDGLKGKRGLDGDPGIMGRPGMPGEPGVRGAPGILGAPGPK
GYVGEPGLPSYAFAEKGDYGNRGYDGFIGMKGEQGESGYIGLPGRKGQVGDRGYPGPVGF
PGLSGFPGLPGDQGPRGAPGLPGEFPEPGEIGRAGLDGMPGISGRPGQKGAPGEYGPNGP
KGISGDIGYSFHGPKGITGDPGARGFVGTPGMPGLEGLQGFPGAPGPKGFRGEPGISGSS
TKGQPGEPGWPGLDGRLGPKGMKGDSGLPGFDGQPGLKGERGEPGEPGLPGLPGPDGPQG
PKGEAGLNPFPPFPRQGPPGDIGVPGLPGFPGLQGMMGEPGKDGLPGRVGERGMIGISGP
SGPDGKDGPPGYQGPPGITGRQGQPGFPGAPGAPAPNGIGPSDRGFYFARHSQSEMIPIC
PRDTVKLWEGFSLLHTMGNGRPYAQDLGAAGSCIKKFSTMPFLFCNLNNVCDYANRNDYS
YWLSTTEPMPMMMTPIPAPEVGRYISRCSVCTAPTRVIAVHSQSMAIPQCPGGWKEIWVG
YSFLMHRDAGADGGGQSLVSPGSCLEEFRVRPFIECRGLGTCNFFATATSYWLATIRDDE
MFRKPLQQTLKADHTSRVSRCAVCIRQRVSEDPYSRTAVLKPFTSNNERAPNNISGRYPA
GPRRYPFVPPNRERYLSHRRPPPNHYRRRDRVRGRHGERPIESSNTL
NT seq
5544 nt
NT seq
+upstream
nt +downstream
nt
atgcggcccagggccccgacaacgtcaacaaacaccggcgacgaggaccgcggcatctcg
cggctggtctccccgctcgtcctgcgaatcacctgcgtccttgccctactggtgctcgcc
gccacatggataccggtcgccgaggctgtgaagtgcaaagattcgtacaaatgcaattgt
accggagtaaaagggctgagagggatttctggaatatctgggcctcaaggaacagaaggg
ctcccgggtgacatcggacctgatggacccatcggacctaaaggcgagaaaggagcagga
ggagaacctggagcaaccggcgaaaaggggcatcgaggggacgaaggtatacgaggattt
gtgggagtccctggactttccggtaatcctggtatactcggtgtggtgggtccggacgga
ctggacggatgcaacgggacggatggtcgagccggcgcacctggtatgccaggagttttc
ggaccgcgcggtgtgatcggagctacgggagattatggtcctccgggagagcctggtgac
ggaggtatcaattcagtcggtgccaagggtattcgcgggaatcccggtatcaacggactg
gagggttatcaaggacaaaggggtttcaccggtgaaatgggctatccaggtgatacgggc
gacttcggtttctcaggtcctcctggattgccaggtatgcaaggtgatcgcggtgacact
gtttacggtttgaagggtccacttggtgaacaaggagacaggggagagcctggttcacca
ggtaaggatgaatacaagaagaaagagaaatcgacgcctgtgaaaggtccaccaggaccg
aaaggcatgaagggtgattatggtgaacgaaatcgcaaaggagagatgggtgccaaaggt
ccacagggccgaccaggttttttgggcatcaaaggtgtgaaaggtgagcaaggtgacgat
gggccaagaggtaaacaaggtatcgagggcccaccaggaccggctggtgagaaaggagag
aaaggagctccaggtttcgctggattgcctggtacggatggattcgatggtgaaccagga
gaagaaggtaatcgcggtccacctggcagacaaggagccgaaggagaacttggacagtat
attccggaacttgatgaaataatcgccggaaatatcggaattcaaggagatcttggtcct
cctggtgaaccaggtgaatcaggaacaccaggttttccaggaaaggtcggttttatagga
ccaccaggaccaccaggaccacctggtattcctggtttatcgggagtgaagggttcgtcc
ataaaaggagaacaaggagatgatggcttatcgggacccatgggacctcagggatctccc
ggactacccggtttatccggaattgtaggagccaagggatttccaggcgtaacgataatt
ggaccatcaggaccagacggcaatccgggtctgccaggattatcaggtccacctggcgat
cgcggtgatcctggtcctccaggagagaaaggtttccccgggaaaggtataagaattcgt
ggaccgcctggagaacgaggtttgcccggaacaccgggtattcctggtcccgatggttgg
cctggtttatttggcactaaaggtggaaagggtattcgaggagatgattgtggcgtatgt
gcaccaggtctacccggggagaaaggagaacgcggtgaatctggcttagacggatatcct
ggagcttcgggatttcctggattaccaggtcctcgaggattcaagggaatacaagggaag
cgaggttcactaggaccagcgggacttgaaggtgacagtggaagatctggtattgcggga
atacaaggacctaaaggagaaccgggaaagatattcttcccgagagacgagcagattgtg
agtccaccgggtgatgttggtgaaaaaggtttgcccggtcccgaaggactcagaggtcta
cgaggacaaccgggacctggtggtgacacaggtgcaccaggaccaaaaggagaaaagggt
gaacatggctcacctggattatcaggaagggatggcacgccgggatgggatggcatacct
ggtgaaaaaggtgaggatgcttcggtaccaattgaggttttacgcggagatccaggctat
ccgggagagcccggaataaaaggaatacaaggagataccggtaacaagggagaacctggc
gaagcctcagaatacgtcgcagacagtaaaggtgacaagggctacaaaggtgctatagga
tctcctggagaatttggtttcaaaggcttccaaggacatgttggtgatgaaggtctacca
ggattacctggtgaaccgggttctccaggtatttcacggcaaggtcctagtggtttgaaa
ggatatcccggaatgccgggagagcaaggacttcgtggaacaccaggttcgcctggatcg
caaggaccaattggttttgcaggtcgcgttggtaacaaaggtgaacgaggagatccaggc
acaaatctaacttatggcgaaattggagaacgcggttggtatggtccaaaaggtgatttt
ggtgatcctggtcctccaggattgcgtggccgaccaggagaggatggtccaaagggtgtc
agaggcgctaaaggagctcctggttatgaaggactgcctggacttgaaggagctaaaggt
caacgtggagatagtatacaaggtgatcgaggttttccgggtatacttggcctgcctgga
atgtccggaagaattggagacgtcggtgttcgtggtcccgatggtccttctggctttgac
ggaatgaagggtttaaagggagaagttggttttattggacgacgtggtgatgacggtgac
accgggcttcagggatatcaaggaatgtacggaagacagggtttaccgggcgctccagga
gaaaaaggagaaatcggcgagaatggtgagccaggccccctcggctggcctggtttcgat
ggtatagatggagcacctggtgctaaaggagaatcaggagataatggaattcctggaaca
ccaggactgagagggccacctggattcaagggtattattggcgacaccggtttcgaagga
ctttggggtcctcctggcgaaaattcctttagtggccctcaaggtgatattggtgaacct
ggttttatgggagaaattgggccacccggtttagctggattcgatggacgaccaggattg
ccgggagaaccgggagtatcaactgatggtttcaatggtttgccaggacagaaaggtgaa
cctggattcgatggatacgatggtagcgtgggaccaaaaggagaaattggtgacatgggt
cctgatggattcaagggtgaacaaggcgctcagggtttcccaggaaggccaggcttgcct
ggaatacctggtaaatatggcgtgaagggtgaaagaggtccggctggacctcttggattc
gatggattgaaaggaaaacgcggtctcgatggtgatcccggtataatgggtagaccagga
atgccgggtgaaccgggtgtaagaggtgccccaggtatcttgggtgctcctggaccgaaa
ggttacgtgggcgaacctggcttaccatcttacgcattcgcggaaaagggtgattacggt
aatcgaggttacgatggttttattggtatgaaaggagaacaaggtgaatcaggatatatc
ggactgcccggtcgtaaaggtcaagttggagatcgaggatatccgggtcccgttggtttc
ccaggattatctggcttccctggtctaccaggtgatcaagggcctcgtggagctccaggc
ttgcctggtgaattccccgaacccggtgaaattggtcgcgctggtctagatggtatgcct
ggtatctcaggtcgtcccggacaaaaaggagcacctggtgaatatggtccgaatggacct
aaaggaatttctggtgacataggctatagctttcatggtcctaaaggaattacgggagac
ccaggtgctagaggattcgtcggcacaccaggcatgccaggtttggaaggattacaaggc
ttccccggagcaccagggccgaaaggtttccgtggagagccgggaatatctgggagtagc
acgaaaggacaacccggtgaacctggatggcctggactagatggtcgactaggaccaaag
ggaatgaaaggtgattccggtctacctggctttgacggacaaccaggactaaaaggagaa
agaggagaacctggtgaacctggtctacctggattgcctggtcctgacggtccacaggga
ccgaaaggagaagctggcttaaatcctttcccgcctttcccgagacaaggacctcctggt
gatataggagttcccggattaccaggcttccctggactacagggaatgatgggtgaacct
ggcaaagacggtctgcctggacgagtaggtgaaagaggtatgatcggtatttctggacca
tcagggccggatggcaaagatggacctcccggatatcaaggtccacctggaataaccgga
cgacaaggacaaccaggttttcctggcgcacctggtgcacctgcgccaaacgggattggt
ccaagcgacagaggtttctattttgctcgtcactcacaatcggaaatgataccaatatgt
ccaagagataccgtaaaattgtgggaaggattttctttattacataccatgggtaatgga
cggccatacgctcaagatctcggtgctgctggcagttgcatcaaaaagttctctactatg
cccttcctattctgcaatttgaacaatgtatgcgattacgccaatcgtaacgactatagc
tattggcttagcacaaccgagcccatgccaatgatgatgacgccaataccggcaccggaa
gttggtagatacatatcgagatgctctgtgtgcacagcaccgaccagagtaatagctgtc
catagtcaatccatggccataccccagtgtccgggtggctggaaggaaatctgggtcgga
tacagtttcctcatgcatagagacgcaggcgccgatggtggtggtcaatctctagtctca
cccggatcctgtttggaggagttccgcgtcaggccgttcatcgagtgccgtggcctcggc
acctgtaacttcttcgccaccgcgacatcatattggctagcaaccatccgtgacgacgag
atgttccgcaaaccgctgcaacagacgctcaaggccgaccatacatcccgagtgagccgc
tgcgctgtgtgcatccgccaacgcgtcagcgaggatccttacagcaggacggcggtcctg
aaacccttcacatcaaataacgaacgtgctcccaacaatatttctgggcgctatccagcc
gggccacgccgttatccgttcgtaccgcccaatcgcgaaaggtatctcagccacaggcgc
ccaccacccaatcactaccgtagaagagatcgcgtgcgcggcaggcacggtgaacgaccg
atagaatcgtccaacactctgtag
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integrated database retrieval system
