Camponotus floridanus (Florida carpenter ant): 105254669
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Entry
105254669 CDS
T03919
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo04382
Cornified envelope formation
cfo04512
ECM-receptor interaction
cfo04518
Integrin signaling
cfo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105254669
04518 Integrin signaling
105254669
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
105254669
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
105254669
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cfo04147
]
105254669
00536 Glycosaminoglycan binding proteins [BR:
cfo00536
]
105254669
Exosome [BR:
cfo04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105254669
Glycosaminoglycan binding proteins [BR:
cfo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105254669
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105254669
NCBI-ProteinID:
XP_025268998
LinkDB
All DBs
Position
Unknown
AA seq
1958 aa
AA seq
DB search
MTRLGLRFIASAVCLAGIVSGQFNTSRPLPVVPLERGDIEAPSNINDDEYDSSLGWRDNL
RDRFFTDNEGYEDPRKRNVSSADHYTTPEERTQLWNYYRNRNNSYGQSYPNRYPYDRSSQ
GGYDRYPDSGGASGSGIDENRQGSYPTGHGEGYYETYSGAGESERGGGGGRSSYNYGQGS
SGDTYSGSYGENYDPRGADSYGRESSGRGSGVTYGSRGGFSDNDNYQSNYHVVPMPGAPS
NCTGSGCCVPKCFAEKGSRGPPGLIGPQGPKGQRGFPGAEGLLGPKGEKGDPGPQGPHGV
KGDRGKMGMPGFPGINGVPGVQGSPGSPGLPGRDGCNGTDGAPGRDGLPGEPGPRGFRGV
SGPKGEKGQPAYAGSFPVGQKGEPGMDGVRGPPGPPGLQGERGPSGLKGERGSYGTPGLP
GPKGAKGNMGLGFEGLKGDKGQKGDPGPPGTTAPIMPFSEVTEVTGPPGEQGQKGDKGEM
GPEAQKGEPGFIGDHGIPGGSGQKGEKGLPGAPGIRGRDGFSGPPGPPGRKGDRGIDGLE
GLSGRPGKKGEPGRDGPMGVSGLRGPPGPPGGGKGRPGPPGPKGPRGFPGPTGPRGTDGF
SGDPGPRGPIGLQGGPGLPGIPGPEGLPGEKGGKGEPGLTGFPGGPGPRGFDGPPGPSGP
RGAPGEKGLSIMGPKGMDGTPGYDGEKGQKGERGYAGVRGRPGDSLDGIPGAPGAPGEPG
EPGASGRDGIPGLPGELGEKGDVGGRCIDCLPGLRGVKGDRGADGIPGLTGPRGPPGERG
FPGEPGLDGLPGAIGPPGQPGKDGIPGAPGPQGESGTPATVTWNMLKLEKGDKGARGESG
RQGPPGPEGPQGEKGRPGFEGFPGLKGTPGDRGFPGQDGVPGRPGTPGRKGEKGLSVKGE
PGESGRPGFVGQKGEPGLYGIKGEAGQCPPLRFMKGFKGDRGLTGDKGEPGPPGLDGLPG
DKGLQGFSGPPGVPGQIGAPGPVGPRGLPGPRGDKGNMGPMGFPGEPGREGPRGFPGAPA
PKGDKGEAGISVKGSPGLPGPPGERGEKGLPGPPGKEGPVGYPGLPGFVGEKGDIGAPGI
NGLPGAPGEKGDTGPVGPPGPPGVAGLPGIDGSKGEPGLPGEPGRAGLPGFPGVKGDRGE
PGIDGPKGYPGRRGLPGTPGRPGVDGEPGIKGEYGDKGSPGFPGLPGMEGKPGRPGISGL
KGDQGLPGSPGLPGLIGYEGAKGDVGLPGPPGRKGEPGQVSEKGQKGEPGMPGIRGAQGP
PGRDGIDGAKGEAGRPGNGRDGLPGLKGEIGTPGRDGLPGFQGEKGDTGVRGFPGLKGDL
GSPGIPGEPGSPGIDGLPGEVGDIGPPGATGFPGLNGEIGSPGRPGLDGVKGDRGLPGLV
GLPGISGALGEKGDRGPPGPTVQIKGEKGEPGIPGFSGSKGEKGDQGLIGIAGYDGEKGD
RGLPGAEGSPGPHGAPGPKGEQGLPGIPGIPGVTIKGEKGLPGLLGKHGRDGLSGRPGEK
GEPGLPGLPGPKGDIGPYGPVGPQGEKGNQGPPGLTGSPGRDGAPGLEGVPGLTGERGPK
GDQGLPGLFGAPGERGEPGHPGPSGLDGLPGEKGERGWDGVNGLPGPPGEKGDRGYTGAI
GLMGAIGYVGQKGEKGEDCIEPPMGPKGDRGYPGSSGPPGPPGEKGLSGPPGFPGLDGIK
GEQGFIGPAGPPGLSGLPGPVGAPGLPGLQGPVGLPGLIGEPGAPCETTPDYLTGILLVK
HSQSQAVPVCEPGHIKLWEGYSLLYTDGDERAHSQDLGYAGSCVRKFSTMPFLFCDVNNV
CHYASRNDRSYWLSTNSPIPMMPVEETAIRDYISRCVVCEVPANVIAVHSQSISIPECPT
GWTTLWIGYSFVMHTGAGAQGGGQSLSSPGSCLEDFRATPFIECNGAKGHCHYYSNQYSF
WMVTIDDGQQFRSPEKQTLKAGNLRSRISRCQVCIKNT
NT seq
5877 nt
NT seq
+upstream
nt +downstream
nt
atgacccggttgggattgcgattcatcgcatccgcagtttgcctggccgggatagttagt
gggcaatttaacacatcaaggccgctaccggtcgtgccactggaacgaggtgatatcgaa
gcgccttcaaacattaacgacgatgaatacgacagttcgttgggatggagagacaattta
agagacagattttttacggacaacgaaggatacgaggacccgagaaagcggaacgtcagt
tctgctgaccattacaccactcccgaagagagaactcaactatggaattactatagaaat
aggaataattcttacggtcaaagttatccgaaccgatatccttacgatcgatcatcgcag
ggcggctacgacagatatcctgatagtggcggcgcgtcaggatcaggaattgacgaaaat
cgacaaggcagttatcctaccggtcatggtgaaggatactatgagacatacagcggtgcc
ggtgaaagtgaacgaggaggaggagggggaagaagttcttacaattatggccaaggaagt
tccggtgatacttacagtggcagttatggggagaattatgatccgagaggcgcggattct
tatggtcgtgaaagcagcggtcgtggtagtggagttacttatggcagccgaggtggtttc
tcagacaacgacaattatcagagcaattatcatgtggtgccaatgcctggagcacccagt
aattgcactggatcaggatgctgtgtgcccaagtgtttcgctgaaaaaggttcacgggga
ccgcctggattaatcgggccgcaaggtcctaagggacaacgaggtttcccaggagcggag
ggtcttctcggtcccaaaggtgaaaaaggagatcccggcccgcaaggtccgcatggtgtg
aaaggtgacagaggaaaaatgggtatgcctggttttcccggtataaatggtgtgcctgga
gtacaaggatcaccgggatctcctggtttgcccggtcgtgatggttgcaacggaacggat
ggtgctcccggacgtgacggtcttcccggagaaccgggacctcgtggttttcgaggagtg
tccggtcctaaaggagaaaagggacagccagcgtatgccggttcttttcccgtgggacaa
aaaggtgaacctggtatggacggtgtaagaggacctcccggtccacctggtttacaagga
gaacgaggcccgtctggcctgaagggtgaacgaggctcttacggtactcccggcctacca
ggtccgaaaggagcgaaaggtaacatgggtctcggattcgaaggactgaagggagataaa
ggtcaaaaaggagatccaggacctcctggtacaactgcgcctattatgccattctcagaa
gtaacggaagtaactggcccgcctggagaacaaggacaaaaaggagataagggtgaaatg
ggaccggaagcgcaaaaaggagagccaggatttataggtgatcatggtatacccggagga
tcaggtcaaaaaggagaaaagggtcttccaggagctccaggtattcgtggtagagatggt
ttttctggacctcctggaccacctggacgaaaaggtgatcgaggtattgatggattggaa
ggactttctggacgccctggcaagaaaggagaacccggtcgagatggaccgatgggtgtt
tcaggattacgaggacctcctggcccaccaggaggtggtaaaggaagaccgggaccacca
ggaccaaaaggaccacgtggttttccagggcctactggaccgcgaggaacagatggtttt
tctggagatccaggaccaagaggtcccataggcttacaaggaggtcccggattacctggc
attccaggtccagaaggtttaccgggagaaaaaggtggaaagggtgagcctggtttgacc
ggatttcccggaggtccaggaccacgtggatttgacggaccaccaggaccatcaggaccg
cgaggagcgccaggagaaaaaggattatcgataatgggtccgaaaggaatggatggaacg
cctggttatgatggagagaaaggtcagaaaggagaacggggttatgcgggtgtccgaggc
cgaccgggagattccttagatggtattccaggagctcccggtgcgcccggtgagcctgga
gaaccgggagcatcaggaagagacggtataccaggccttcctggagagttaggagagaaa
ggagatgttggcggtcgttgcatagattgtttaccaggattgcgaggtgttaaaggagat
cgcggtgcagatggtattccgggtcttactgggcctcgaggaccgcccggagaacgcggt
ttccctggagaacctggattagacggactaccaggcgcaattggacctccgggacaacca
ggaaaagatggtatacccggtgctccaggacctcaaggagaatctggaactccagcgaca
gtgacatggaatatgcttaagctagaaaaaggtgataaaggagcgcgcggcgaatctggt
cgacaaggcccgccaggaccagaaggacctcagggagaaaagggaagacccggatttgaa
ggattcccaggacttaaaggcactccaggagatcgtggattcccaggacaagatggagtt
ccaggaagaccaggtacacctggacgaaaaggagaaaaaggattaagcgtaaagggtgaa
ccaggagaatcaggtagaccaggatttgtaggacaaaaaggagaacctggcttatatggt
attaagggtgaagctggtcaatgtccaccacttcgctttatgaaaggtttcaaaggtgat
cgaggtttaactggagacaagggagaacctggaccacctggtttagatggattacctggt
gataaaggcttgcaaggtttctcgggtccacctggtgtacccggtcaaatcggtgctcct
ggacctgtaggtccgagaggattgcctggcccacgtggtgataaaggtaatatgggacct
atgggtttcccaggagaacctggtcgagaaggacctagaggtttcccaggtgccccagct
ccgaaaggtgataaaggagaggccggaatatctgtgaagggcagtcctggtttaccaggt
cctccgggtgaaaggggagagaaggggcttccaggtccacctggaaaagaaggtccagta
gggtatccaggattaccaggttttgttggagagaaaggagacatcggtgcaccgggaata
aatggtttaccgggagcacccggtgaaaaaggagatactggtccagttggtccacctggt
cctccaggtgtagctggtcttccaggaatcgacggaagcaaaggcgagccaggattaccg
ggcgagcccggtagagcgggtctgccaggattcccaggcgtaaaaggtgatcgcggtgaa
ccaggtattgatggaccaaaaggatatccaggcagacgaggtttgcctggaactccaggt
agacctggtgtggatggtgaaccgggtataaaaggagaatatggagataaaggttcgcca
ggattccctggattaccaggtatggaaggaaaacctggtcgccctggcatatccggcctg
aaaggagatcaaggattacccggttcgcctggtttaccgggacttattggttatgaagga
gctaaaggtgacgttggcttaccaggaccaccgggaaggaaaggagaaccaggacaagtt
tcggaaaaaggacaaaaaggtgagccaggaatgcctggaatacgaggtgctcaaggtcct
ccaggacgagacggtatcgatggagcaaagggagaagctggcagaccaggtaatggtcgt
gatggattgcctggattgaaaggagaaataggcacgcctggtcgggacggattgccagga
tttcaaggtgaaaagggtgacactggtgtacgaggattccctggactaaaaggcgatttg
ggttcaccaggtatacctggagaaccaggatcacccggaatagatggacttcctggagaa
gttggcgatattggaccaccgggagcaactggtttcccaggccttaatggcgagataggt
tctcccggacgacctggacttgatggcgttaaaggagatcgcggtttaccaggacttgtc
ggattgcctggtatttctggagcactaggagaaaaaggagatcgtggccctccgggacca
acagttcaaattaagggtgaaaagggagagccaggtatccctggattctctggatcaaaa
ggagagaagggagatcaaggactaataggtattgctggttatgatggcgaaaagggtgac
agaggtttacctggagcagaaggatctcctggacctcatggtgctcctggacctaagggt
gaacaaggacttcctggtattcctggaatccctggagttacgataaagggtgaaaaaggt
ctgccaggtcttttgggtaagcacggtagggatggattgtcaggacgacctggagaaaag
ggtgagccaggattgcccggtttgcctggaccaaagggagatattggtccctacggaccg
gttggaccacaaggtgaaaaaggtaatcaaggtccaccaggtttgactggatcaccagga
cgcgacggagctccaggtctagaaggtgtaccaggattaactggtgaaagaggtccaaaa
ggtgatcaaggattgcctggattatttggcgctccaggagaaagaggagaacctggtcat
ccaggaccaagtggattggatggacttccaggagagaagggtgaaagaggttgggacggt
gttaatggtctacctggaccgcctggcgaaaagggtgatagaggatatactggtgcaatc
ggattgatgggtgccattggttacgtaggacaaaaaggtgaaaagggtgaagactgtatc
gagccgccgatgggacctaaaggagatcgcggatatcctggatcatctggaccgcctggt
cctccgggagagaaaggactttcgggtccgcccggtttccccggcttggatggtatcaaa
ggcgagcaaggtttcatcggcccagcaggacctcctggactgtcaggattacctggacca
gtcggcgcgcccggtctaccaggtcttcaaggtccagtcggtctgccgggacttattgga
gagcctggtgcaccgtgcgagacgacacctgattatctcaccggtatccttctagtcaaa
cacagtcaaagccaagctgtgcccgtttgtgagccaggccatatcaagctctgggaagga
tacagtttactctacacggatggtgacgaaagggcacattctcaagatttaggttatgcc
ggttcgtgtgtcagaaaattctcaacgatgcccttcctgttctgcgacgtcaataacgtc
tgccattatgctagtcgcaatgatcgttcttactggctatcgaccaatagtccaattccc
atgatgcctgtcgaggaaacagcgataagagattatatctccagatgcgtggtgtgcgaa
gttccggctaatgtgatagcggtacacagtcaatcgataagcattccagaatgtccgact
ggatggaccactctttggatcggttatagtttcgtaatgcacaccggcgccggtgcccag
ggcggtggccagtccctgtcgagtcctggttcctgcctggaggacttccgcgccacaccg
ttcatcgagtgtaacggcgctaaaggacactgccattactattctaatcagtacagcttc
tggatggttactatagacgacggccagcagttcaggagccccgaaaagcaaactctaaag
gcgggcaatcttaggtcccgaataagtcgctgccaagtttgtataaagaatacgtaa
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integrated database retrieval system
