Camponotus floridanus (Florida carpenter ant): 105255089
Help
Entry
105255089 CDS
T03919
Name
(RefSeq) PAN2-PAN3 deadenylation complex catalytic subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105255089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfo03019
]
105255089
Enzymes [BR:
cfo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105255089
Messenger RNA biogenesis [BR:
cfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105255089
mRNA degradation factors
3'-5' decay
Pan complex
105255089
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
zf-CCCH_2
DNA_pol_A_exo1
Motif
Other DBs
NCBI-GeneID:
105255089
NCBI-ProteinID:
XP_011262473
LinkDB
All DBs
Position
Unknown
AA seq
1323 aa
AA seq
DB search
MDYPVLGHYDPTVEATDHGSGEEEQELLWEECNYVVPGDEYVPAAEQFGEDFAGAEFHET
RTLLADGGDRFGVSTATFDTIEELMWMGNQGGHVTSYYGPGLQKYTSFQVHATQEIRHIH
PVDEGILVLTQSILRCQLRRGIPIFTHTSTNMNDMQCMLQISPTRLLMGGHQDKIIDFNL
TRGKETGLMDVGENGCAILRQHSRLICAGNPAGRIDLRDPNTLSIEHTLDTHSGSLSDFD
VQGNYLVTCGFSNSRQGLTVDRFLMAYDLRQMRALSPVTTMVYPLLLKFLPSYSSRLAVV
SPLGQMQLLDTIYANVQPSMTCLYQVATGGAAILSFDVASTSQCLCFGDSAGSIHLMSTN
NPEPQFNTFSRPTEFADPIETVQSIPFDDDVTPFSTIPMVYSDQPLLSDWPEEFLKKVYR
KTPAIDPEILRTMKMQGTIGYAPNPQAFRRNQIPYNLEKRRGLIAKPFAGDSRCKTDDGT
FVAIPKRYRKIELKYSRLGYDDFDFDQYNRTSFCGLEATLPNSYCNAMLQLLYYCEPVRI
ALLSHSCQREFCLSCELGFLFHMLDISRGLPCQAANFLRAFRTVPEAAALGLILSDLHPE
AKKKISLIRLIQSWNRFILHQIHYEILETRKRQQEEEEAARLKTGSKYPPFVYNEQDFPS
ILEDLGSRYRSHDDERKKKRKQEEDGKYMWITSKDKNTKKSAEENEVRDDETEISHLFGS
EQMHIHRCLKCGQEATKHSIMLLCNLVYPEIINPSEEVPFTSVLARSLRPEKITPAWCDN
CQKFTPTLQSRQLTKLPQILALNCGLDTQQDKAFWQNQMDIVVQNVLTGKESSPSSSPVP
VTAKPCRYGNNCTRVGCRFRHVGRDSETEKLLTSPSTPSTSSTSVTPPSHLYYSHSWIPH
NIEISLEENGEMSVKKISEPKNELMNDTSAQMNVVENGQDDKIVRTLSDNNVEDNNDEDC
NNIENCNIVSNSEGNETKSTNSEISRNIQKIQYGLSAVVCYVDDKNNEERRNIVTLLRVG
PNYHVRSSGNPVSQWYIFNDFCISPVTPQEAVWFNLDWKVPCVLHYTAIPAPEPTAYVSP
LTYDVFGEDKCIARSGGTRGITFTPLASDEMPKKGELVGIDAEFVTLNQEESELRSDGKM
STIKPSHMSVARITCIRGQGPLEGTPFIDDYISTQEQVVDYLTKFSGIQPGDLDANFSSK
HLTTLKSTYQKLRFLVDNGIIFVGHGLKNDFRVINLVVPPEQIVDTVLLFHLPHHRMVSL
RFLTWHFLGKKIQSETHDSTEDARAALELYRKYKELESCGTLRETLKELYEVGTQLQWKV
PDS
NT seq
3972 nt
NT seq
+upstream
nt +downstream
nt
atggactacccggtgttaggccactacgaccccaccgtagaggccacggaccacggtagc
ggcgaggaggagcaggaactgctgtgggaggaatgtaattatgttgtacctggagatgag
tatgtacctgcagcggagcagtttggagaggattttgctggggctgaatttcacgaaact
agaacattgctcgctgatggcggagatagatttggagtttccactgccactttcgatacg
attgaggagcttatgtggatggggaatcaagggggccacgtaacatcttattatgggcct
ggtttacaaaaatatacctcttttcaagtccatgcgactcaagagatccgacatattcat
cctgtagatgaagggattttagtgttgacccagagtatattgagatgtcagctgcgacga
ggcatacctatatttacacacacgtcaacaaatatgaatgacatgcagtgcatgttgcaa
atctctccgaccagattactcatgggtggacatcaggataaaataattgattttaacctt
actagaggaaaggagactggattaatggacgtaggagaaaatggttgtgcgatattgaga
caacacagtagacttatctgtgctggtaatcctgcaggacggatagatctcagggaccca
aatacattatcaatagagcatactctggatacacatagtggttccctaagtgattttgat
gtacagggaaattatcttgttacatgtggattcagcaatagtcgtcagggccttaccgtt
gatcgatttttaatggcctacgatctgagacaaatgagagcattgagtccggtcactact
atggtatatcctctcttattaaagtttctaccaagttactccagtcgcctcgcagtagta
tcgccactaggacaaatgcaactacttgatacaatatatgccaatgtacaaccctcaatg
acatgtttgtatcaggttgctactggcggagcggcgatattatcatttgatgtagcttcc
acatctcagtgtctctgctttggagattcggcgggttctatacacctaatgtctaccaac
aatccggaacctcaatttaatacattttctagacctacggaatttgccgatccaatcgag
acagtacaatcaattccttttgatgatgatgttacaccgtttagtacaataccgatggta
tattctgatcaaccacttttaagtgattggccagaagaatttttaaaaaaagtttatagg
aaaactccagcaatagatcctgaaattttgcgcacaatgaaaatgcagggaacaatagga
tatgcgccaaatcctcaggcttttcgcagaaatcaaataccgtacaatttggaaaaacga
cgtggcttaatcgcgaaacctttcgcgggggactcacggtgtaaaacagatgacggcacc
tttgtggccatacctaagcgttatcgtaaaatcgagttgaaatattcacgactcggttac
gacgattttgatttcgatcaatacaatcgaaccagcttttgcggtctggaggccactctt
cccaatagttattgcaatgctatgctgcagttactatattactgcgaacctgtaagaata
gcattgctctcacactcgtgtcaacgagaattctgtctttcttgcgaattgggattcttg
tttcacatgttggatatatcacgtggattaccctgtcaagctgcgaattttctgagggct
tttaggacggtaccagaagcggcagctttaggacttatattgagcgacttgcatccggaa
gctaagaaaaaaatcagcctgattagacttatacaaagctggaatcgattcattctacac
caaatacactatgagatactggaaactagaaaacgacagcaggaggaagaggaggcagcg
cgacttaaaacaggatccaaataccctccatttgtttataacgagcaggatttccctagc
attcttgaagatctcggttctcgatatagaagccacgatgacgagaggaaaaaaaagaga
aagcaggaggaggatggtaaatatatgtggatcacatcgaaagataagaacaccaaaaag
tctgccgaagagaatgaagtgcgagatgatgaaacagagatcagtcatctatttggatct
gaacaaatgcacatacatcgctgtctcaaatgtgggcaagaagctacgaaacattccatc
atgttactttgtaatttagtttatccggaaataatcaatccttctgaagaggtaccgttc
acaagtgttcttgcccgcagtttaagacctgagaaaattacacccgcatggtgtgacaat
tgccagaaatttacacctactctccagtctcgacaattgactaaactacctcaaatattg
gccctaaattgtggcttagatactcaacaggataaagcattttggcaaaatcagatggac
atcgtagtgcaaaatgtattgacggggaaagagagtagtcccagttccagtcctgtacct
gttactgcgaaaccttgtcgatatggcaataattgtacacgagttggatgtcgattcaga
catgttggtcgtgactcagaaacagagaaattattaacatcgccttctactccatctacc
tcgtcgacatctgttacaccccctagtcatttatattactcgcattcctggatacctcac
aacatagagatctcccttgaagaaaacggtgaaatgtcggttaaaaaaattagcgaacca
aaaaatgaattgatgaatgatacatccgcacaaatgaacgtggtggagaacggccaagat
gacaaaatagtgcgaacactttccgacaacaacgttgaagacaataatgacgaagattgt
aacaacattgaaaattgtaatatagtatcgaactcggagggaaatgaaacaaaaagtaca
aattcagagatctctaggaatattcaaaaaatacaatacggtctaagtgctgtcgtctgt
tatgttgacgataaaaataatgaggaacggagaaacattgtaacgttgttgcgagttgga
ccaaattatcacgtacgatcgtcgggcaatcctgtatcgcagtggtatatttttaatgat
ttttgtatatcaccggtgacaccgcaagaagcagtgtggtttaatctcgattggaaagta
ccatgtgtgctccattatacagcgatacctgcacctgaaccgacagcatatgtcagtcct
cttacatacgatgtatttggcgaagataaatgtatcgcgcgaagtggtggaaccagaggc
attacgtttactcctttagcgtcagacgaaatgcctaagaaaggagaattggtagggatt
gacgcagagttcgttactttaaatcaagaagaatctgaattgcggagcgacggaaaaatg
tcaactataaaaccaagccacatgtccgtagcgcgaatcacttgtatccgcggacaaggt
ccactggaaggcacaccgtttatagacgattacataagtactcaagagcaggtggttgac
tatttgacaaaattcagtgggattcaaccgggtgatttggacgcaaactttagtagcaaa
catcttaccactctgaaatcgacgtatcaaaagttgaggtttttagtggacaatggcata
attttcgtcgggcacggcctaaaaaatgattttagggtaataaatttggtagtaccgccg
gagcaaatagtagatacagttttattattccacttacctcatcatcgtatggtgtcgtta
cgcttcttgacctggcattttctgggtaaaaagattcaatccgaaactcacgattcgacc
gaggatgcgcgagcagccttagaattgtatcgtaagtacaaagaactagaaagctgtggc
acattgagggaaacgcttaaggaactttacgaagtgggcacgcagttacaatggaaagtc
cccgatagctga
DBGET
integrated database retrieval system
