Camponotus floridanus (Florida carpenter ant): 105255099
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Entry
105255099 CDS
T03919
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105255099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfo03019
]
105255099
03041 Spliceosome [BR:
cfo03041
]
105255099
Messenger RNA biogenesis [BR:
cfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
105255099
Spliceosome [BR:
cfo03041
]
Complex B
Other components
Prp19-related factors
105255099
Complex C
105255099
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_8
TPR_15
TPR_12
RPN7
PPR
Mad3_BUB1_I
TPR_10
NRDE-2
ARM_TT21
ARM_TT21_C
DHR-2_Lobe_A
Microp_apicomplexa_6
SNAP
Motif
Other DBs
NCBI-GeneID:
105255099
NCBI-ProteinID:
XP_019884278
LinkDB
All DBs
Position
Unknown
AA seq
839 aa
AA seq
DB search
MENNEDNLYAFNEEDLPYEEEILRNPYSVKHWQRYIDHLKNSKSKNLNVVYERALKELPG
SYKLWYNYLRQRVSQLKDRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQCYI
TRTRQVFDRSLRALPITQHHRIWPLYINFLKKHNVYETAVRVFRRYLKLAPEDTEEYIEY
LISVGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPAKIKSLNVDAIIRG
GLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFEELS
LKKLIEEAAKNPTEEDDIKLELRLARLEHLMERRLLLLNSVLLRQNPHNVAEWHKRVKLY
EGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVAFGKFYEENGQIEDARVVFEKATHVPYT
KVDDLASVWCEWAEIEIKHGNCKEALKLMHRATTMPARKVAYHDETETVQMRLYKSLKVW
SMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENNYFEEAFRAYEKGIAL
FKWPNVYDIWNTYLTKFLTRYGGTKLERTRDLFEQCLEHCPPKYAKALYLLYAKLEEEHG
LARHAMSVYERATNAVLPEERFDMFNIYIKKAADIYGVPKTRQIYEKAIEVLNDENTREM
CLRFAEMETKLGEVDRARAIYAHCSQICDPRVTSKFWQIWKEFEVRHGNEDTMREMLRIK
RSVQAMYNTQVNMMSAQMLNNAANQILDVPMDAMRLLDSKITSNTENAADLKGGIKFVRG
ITEKDGKPESYVNNPDEIDIDMDDENENDEEIEEDVPIEKRTIPSQVFGSLKTVEDEDD
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataatgaagataatttatatgcttttaatgaagaggatttaccatacgaagaa
gaaattttacgaaatccatattcagtcaaacattggcaacgctatattgatcacctaaaa
aattcgaaaagtaagaatttaaatgtggtgtatgaacgagcattgaaagaactcccaggc
agttataaattatggtataattatcttcgacaacgtgtaagccagttaaaagatcgatgt
ataacagatccattgtatgaagatgttaataatgcgtttgagcgtgctttggtatttatg
cataaaatgccacgcatatggatggattattgtacactaatgactgaacaatgttatata
acacgaacacgtcaagtatttgatcgttctcttagagctcttcccatcacgcagcaccat
cgtatatggccattatatattaatttcttaaagaaacataatgtttatgagactgctgtc
agggtatttagaagatatttaaagttggctccagaagatacagaggaatatatagaatat
ctaatatcagttggtagacttgatgaagctgctgtaaaacttgcacaaattgtcaatcaa
gatgattttgtatcaaaacacgggaaatctaatcatcaattatggaatgaattatgtgat
ttaatatcaaaaaaccctgccaaaataaaatccctgaatgtagatgctatcattagaggt
ggtttaagacgttatacagatcaattgggacctttatggaattcactagctgattactat
gttcgaagtggtctttttgagagggcaagagatatttatgaagaagctatacaaactgtt
actaccgtcagagattttactcaagtttttgatgcttatgcacaatttgaagaacttagt
cttaaaaaacttatagaagaagcagcaaaaaatcctactgaagaagatgatataaaatta
gaattgaggctggcacgattagaacatcttatggaaaggagattattattactcaattct
gtattactacgacaaaatccacataatgtagcagaatggcacaaaagagttaaactctat
gagggacaaccacatgagataattaatacatacacagaagcagtgcagacagtgcagcca
caattagcagttggtaaattgcatacattgtgggttgcatttggcaaattttatgaagaa
aatggacaaatagaagatgctagagtggtatttgaaaaggcgactcatgtcccatatacc
aaggtagatgatcttgcttcagtgtggtgtgaatgggcagaaatagaaattaaacatgga
aattgtaaagaagctttaaaactcatgcatcgtgctactacaatgccagctagaaaagtg
gcatatcatgatgaaacagaaacagtacaaatgagattatacaaatctttaaaagtatgg
tctatgtatgcagatttagaagaaagttttggaacatttaagacttgtaaagcagtatat
gataaaataatcgacttgaagattgcaactcctcaaattatcattaattatggattattt
ctcgaagaaaacaactactttgaggaagcatttagagcatatgaaaaaggtattgcatta
tttaaatggcctaatgtctatgatatttggaatacatatctcacaaaatttttaactcga
tatggtggtacgaaattagaacgtaccagggatctgttcgaacaatgtttagaacattgt
ccaccaaaatatgctaaagccttatatttactgtatgcaaaattagaagaagaacatggt
ttagcaagacatgctatgtctgtgtatgagcgagcgacaaatgctgttcttccggaagaa
agatttgatatgtttaacatatatataaagaaagcagcagacatatatggggtgccgaaa
acgcgacaaatatatgaaaaggccatagaagttttaaatgatgagaatactagagaaatg
tgtctacgattcgcagaaatggaaactaaattaggagaagtagacagagcgagagcgata
tatgcacattgtagtcaaatatgtgatccaagggtcacatcaaaattctggcaaatttgg
aaagaatttgaagttaggcatggaaatgaggatacaatgcgtgaaatgcttcgaattaag
cgtagtgtgcaagctatgtataatactcaagtaaacatgatgtctgcacaaatgttaaat
aatgcagctaatcaaatattagatgttccaatggatgctatgcgtttattagatagtaaa
attacatcaaatacagagaatgctgctgatctcaaaggaggtattaaatttgtacgtggt
ataacagaaaaagatggtaaaccagaatcttatgtgaataatccagatgagattgatatc
gatatggatgatgaaaatgagaacgatgaagaaatagaagaagatgtaccaattgaaaaa
cgaactataccatctcaagtatttggtagtttgaaaacagtcgaagatgaagatgattaa
DBGET
integrated database retrieval system
