Camponotus floridanus (Florida carpenter ant): 105255559
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Entry
105255559 CDS
T03919
Name
(RefSeq) probable DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
105255559
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cfo03400
]
105255559
DNA repair and recombination proteins [BR:
cfo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
105255559
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
Motif
Other DBs
NCBI-GeneID:
105255559
NCBI-ProteinID:
XP_025262250
LinkDB
All DBs
Position
Unknown
AA seq
1117 aa
AA seq
DB search
MPKVNTILNYFTSPKTVKKPETKKGSAENSQTPKAEQKRKELIGNNGKENQNTYDKKRSY
KKNDDKEDNEPVKIKRRRLIIPDDDSDEDIENEFKTDPKSEESESTLEKDIEDESSETEE
ETPKKKKKSNAKSKSEQASYKADKKELKQSVQNQTMSNGLATTHVWPHLKLDFLQPEKIR
DIQRRTLKDPDYDSRTVYVPVDFLNNQTPAMRQWWELKSKHFDCVLFFKVGKFYELYHMD
AVIGVNELSLTYMRGEFAHSGFPEIGYGRYSASLIERGYKVARVEQTENPEMMATRCSKM
IKTTKFDKVVKREICQISTRGTRVYTPLDVEASSPNSNYLLSLVERCDPGQTNSSFGVCF
IDTTIGEFNLSQFDDDYCNSRLLTLLAHHPPMHVIYERGNLSRKILQLINNTLPAALKEP
LQREAQFWSATTTLKNLHEGNYFKKEEDSDFAWPAGLKSYLNEGDSLGLTPASNKELAVH
ALGGCVYLLKDFLLEQQLLAQGCFNTYIPPDFSAANNRAGLSYTNTMVIDAVTIKNLRIF
GENSLNSVLDHCCTAFGKRLLREWICRPSCRKDIIIKRQKAVQELVDRIDMIQSARAILS
TLPDLERLLSKIHAQGNAAKMKNHPDGRAIMFEGPTYSKRIIVEFTMTLAKFEEVLKFIE
LFNDFESNLISHCTQYEPNGDFPQLREILDYFKTAFDHEEAKKQGCIVPKKGVDAEYDLV
LTELAKNKKDLDKYLEKQKQHFDANISFFGTDKKRYQIEVPESRVKKVGPGYELQSQRKG
FKRYYTAEAKELLARQINTEEHRDKVLKDLNRRIFAQFSEKYDMWHRAIYKVATMDVLIS
LADYARNGDMCIPEIHDGLDGEIFIKIRDGKHPCIISDNFIPNDTLLATDDTASLMILTG
PNMGGKSTLMRQVGLITIMAQIGSYVPASSCCITLVDRIFTRLGANDDILTGQSTFLVEL
NETATMLQHATPYSLVLLDELGRGTSTYDGTAIAASVVDALTKLKCRTLFSTHYHSLVED
YKTNKEVTLAHMACMVETGEEENVSEETVTFLYKLSEGACPKSYGFNAARLAGIPSIITK
KAHEIASKMEQETNDKHIFIALCKANGAQMRNFITAL
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggtaaatacgatacttaattatttcacgtctccaaaaactgtcaaaaagccg
gagacgaagaaaggaagcgcagaaaattcgcagacacccaaagcagaacaaaagagaaaa
gagcttattggaaataatggaaaagaaaatcaaaatacctatgataaaaaaagatcatat
aaaaaaaatgatgataaggaagataatgaacctgtaaaaatcaagagaaggcgcttaatt
attcctgatgatgattccgatgaagatattgaaaatgaattcaaaacagatcccaaaagt
gaagaatctgaatcaactttggaaaaagatatagaagatgaatcttcagaaacagaggaa
gaaacaccaaaaaagaaaaagaaatccaatgctaaatccaagtcagaacaagcatcatat
aaagcagataaaaaggaattgaaacagtctgtacaaaatcagactatgagcaatggactt
gccactacacatgtttggcctcacttgaaattggattttttgcaaccagagaaaataagg
gacatacagaggagaaccctaaaagatccagattatgattccagaacggtttatgtgcca
gttgattttttaaacaatcaaactcctgcaatgagacaatggtgggagttaaaaagtaag
cattttgactgcgtacttttcttcaaagtcggcaaattctacgagttgtaccacatggat
gcagttattggtgttaatgagcttagtctcacatatatgcgaggtgaattcgcacactct
ggatttcccgaaatcggctatggtcgttattcggcaagcctaatagaaagaggttacaag
gttgcgcgagtcgagcaaaccgaaaatccggagatgatggcaacgcgctgcagtaaaatg
attaagacaacaaagtttgacaaagttgtgaaacgagaaatttgtcaaattagtacaagg
ggcactagagtatatacaccattagatgtagaagcatcttcaccaaattccaattatctg
ttatctttagtagaaagatgtgatcctggtcagacaaacagttcttttggagtatgcttc
atagatacaacaataggcgaatttaatctcagtcaattcgatgatgactattgcaattct
agattgttaactctactggctcatcatccaccaatgcatgtaatatatgaacgtggtaat
ctatcgcgaaagattttgcagcttataaataacactctaccagcagcgctaaaagaaccg
ctacagcgcgaagcacaattctggtctgctacaactacattaaaaaatcttcatgaaggt
aattatttcaagaaggaggaagattccgactttgcttggcctgcaggtttaaaatcatat
cttaatgaaggagatagcttgggtttaacgccagccagtaacaaagaattagcagtacat
gcactaggaggctgtgtatacttattaaaagacttcctgcttgaacaacaactattggca
caaggttgctttaatacttacattccgccggatttctcagctgcaaacaatcgcgcaggt
ctcagttatacaaacactatggtgatagatgctgttacaataaaaaacttaagaattttt
ggagagaattcgcttaatagtgttttagaccattgctgtactgcatttggtaaaagattg
ttgcgtgaatggatctgtaggccatcttgtcgtaaagatattataataaaacgccagaaa
gctgtgcaggaattggtagatcgaatagatatgatacagtcagctcgcgcaattttatca
acactgccagatcttgaaagattattaagcaaaatacatgctcaaggaaatgcagctaaa
atgaaaaatcatcctgatggcagagccataatgtttgaaggcccaacgtattcaaagaga
ataattgtagagtttactatgacacttgctaaatttgaagaagttttgaaatttattgaa
ctatttaatgattttgaaagtaatttgataagccattgtacacaatatgaaccaaatggt
gatttccctcaattaagggaaatattagactactttaagactgcatttgatcacgaagaa
gctaaaaagcaaggttgtattgttcctaaaaaaggagtagatgctgaatatgatttagtc
ttgactgaacttgcaaagaacaagaaagatttagataaatatttggaaaaacaaaaacag
cattttgacgcaaatatatcattttttgggacagataagaaacgttatcaaattgaagtt
cctgagtcacgagttaagaaagttggtcccggatatgaactacagtcacaaagaaaaggt
tttaagcgttattatactgctgaagcaaaggaacttttagcaagacagataaatacagaa
gagcatagagataaagtactgaaggatcttaacagaagaatatttgcgcaatttagtgaa
aaatatgatatgtggcatagagccatttacaaagtagctactatggatgtgcttatttct
ctcgcggattatgctcgaaacggtgatatgtgtataccagagattcatgatggattagac
ggtgagatctttatcaaaataagagacggaaaacacccttgtattatatctgataacttt
attcccaatgataccctattggcgactgatgatactgcctccttgatgattctaacagga
ccgaacatgggaggcaaatcaactctcatgcgtcaagtgggcttgatcacaatcatggcg
cagatagggagctatgttccagctagttcatgttgtataacattggtggatcgtattttt
acccgcttgggtgctaacgacgatattctgactggacagagtacgttcttggttgaactg
aatgaaactgccacgatgttgcaacacgccacaccctattccttggttcttcttgatgag
ttaggacgcggcacatcaacctatgatggtacagcaatagcagcttcggttgttgacgca
ttaactaagttaaaatgtcgtacattattctcgactcattatcattctttggtcgaagat
tacaagaccaataaagaggtcacattagctcatatggcatgcatggtagaaacgggagaa
gaggaaaacgtatcagaagagacggtaacgtttttatacaagctcagtgaaggagcttgc
ccgaaatcttatggattcaatgccgctcgactagcaggcataccatctattatcacaaag
aaagcgcatgagatcgctagtaagatggaacaagaaactaatgacaaacacatttttatt
gctctctgtaaagccaacggtgctcaaatgagaaattttattactgctctttaa
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