Camponotus floridanus (Florida carpenter ant): 105256330
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Entry
105256330 CDS
T03919
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105256330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cfo03041
]
105256330
03009 Ribosome biogenesis [BR:
cfo03009
]
105256330
Enzymes [BR:
cfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105256330
Spliceosome [BR:
cfo03041
]
Complex A
U2 snRNP components
U2 related factors
105256330
Complex B
105256330
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
105256330
Ribosome biogenesis [BR:
cfo03009
]
Eukaryotic type
90S particles
Helicases
105256330
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_19
AAA_22
nSTAND3
SRP54
ResIII
AAA_30
Flavi_DEAD
T2SSE
AAA_7
ABC_tran
TsaE
AAA_16
ATPase
AAA_25
Motif
Other DBs
NCBI-GeneID:
105256330
NCBI-ProteinID:
XP_011264451
LinkDB
All DBs
Position
Unknown
AA seq
719 aa
AA seq
DB search
MSKRRIEVVDPYVKRKATDSSTSNNATAAPSTATKSQVQFNPYTMLPYTPRYYELYKKRI
TLPVFEYRTDFVRLLSQHQCIVLVGETGSGKTTQIPQWCVEYSRSIGNKGVACTSPRRVA
AMSVAQRVSEEMDVALGQEVGYSIRFEDCSSPRTVLKYMTDGMLLREGMSDPMLDAYQVI
LLDEAHERTLATDLLMGVLKEVIKQRPDLKLVIMSATLDAGKFQQYFDNAPLMNVPGRTH
PVEIFYTPEPERDYLEAAIRTVIQIQMCEEIAGDLLLFLTGQEEIEEACKRIKREMDNLG
PEVGELKCIPLYSTLPPNLQQRIFEPAPPTKPNGAIGRKVVVSTNIAETSLTIDGVVFVI
DPGFAKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEKAYKNEMQDN
TYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALDDDGNLTD
LGAVMAEFPLDPQLAKMLIASCNHNCSNEILSITAMLSVPQCFVRPNESKKAADDAKMKF
AHIDGDHLTLLNVYHSFKQHMDDVQWCYDNYVNYRSLKSGDNVRQQLSRIMDRFVLKRTS
TDFNSKDYYINIRKALVNGFFMQVAHLERTGHYLTIKDNQVVQLHPSSCLDHKPEWVIYN
EFVLTTKNYIRTVTDIKPDWLLMIAPQYYDLQNFPQCEAKRQLEMIQAKLDSKQYQEGF
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgtaggattgaggtcgtggacccttacgtcaagcgaaaagccacggacagc
tcaacatctaataatgcgacagctgcaccatccacagcgacgaaaagccaagtgcaattc
aatccatatactatgctgccatatacaccgagatactatgaactttacaagaaaaggata
actctgcctgtatttgaatatcgtactgattttgtgagattgttatctcaacatcaatgt
attgttcttgttggagagactggttctgggaaaactacacagataccgcaatggtgtgta
gaatattcaaggagtattggaaacaaaggtgttgcctgtacatctccaagaagagtagca
gctatgagtgtagctcaaagagtttcagaagaaatggatgttgccttaggtcaagaggta
ggatacagtatccgttttgaagattgtagctcaccaaggactgtactaaagtatatgact
gatggtatgttacttcgtgaaggcatgtctgaccctatgctagatgcatatcaagtgata
ctgctcgatgaagcacatgaaagaacattagctactgacttgcttatgggtgttttgaaa
gaagtgatcaagcaaagacccgatttgaaacttgtgattatgagtgccactttggacgct
ggaaagtttcaacaatatttcgataatgcaccacttatgaatgtacctggtagaacgcat
ccagttgaaatattttatacaccggagccggaaagagactatttagaagctgcaattaga
accgttattcaaatccaaatgtgtgaagaaattgccggggaccttttattatttttaact
ggtcaagaggaaattgaggaagcttgcaagagaattaaaagggaaatggacaacttggga
cccgaagtcggtgaattaaagtgtataccgctgtattcaacgctgccgccaaatcttcaa
cagagaatatttgaacctgctccacctactaaacctaatggtgctatcggtcgcaaagtc
gtagtttcgactaatattgcagaaacatcgttgactatcgacggtgttgttttcgtgata
gatcctggttttgccaaacaaaaagtatataatcccagaattcgtgtcgagtctctttta
gtatcccctattagtaaggcttcagcacaacaacgagccggtcgtgctggtagaacaaga
cctggaaaatgtttcagattgtacacagaaaaggcatataaaaatgaaatgcaggataat
acttatcctgaaattttgcgttccaatcttggaagtgttgtgttgcaattgaagaaactt
ggtattgatgatctggtacattttgattttatggacccacctgcacctgaaactctcatg
agagctttggaacttttgaattatttggcagctcttgatgatgatgggaacttgacagat
ctcggagcagtgatggcggaatttccattggatccccaattagcaaaaatgcttatagct
tcttgcaatcataattgcagcaatgaaatactcagcattactgctatgctctcagtccca
cagtgttttgtgagaccaaacgaatcgaaaaaggctgcggatgatgcaaaaatgaaattt
gcacatattgatggtgatcatttgacgctacttaatgtatatcattctttcaaacaacat
atggatgatgttcaatggtgttacgataattatgttaattatcgatcgttaaaaagcgga
gataatgtaagacaacaattgagtagaataatggacagatttgtattaaagcgcacttca
accgacttcaattcaaaagattattacattaatattagaaaagctcttgttaatgggttt
ttcatgcaggtagcgcatttagagagaacgggacattatctgactattaaagataatcaa
gtggtacagcttcatccaagcagctgtctggatcataaaccagaatgggttatttataat
gaatttgtgcttacaactaaaaattatatcagaacagttactgatattaaacctgattgg
ttgctgatgatagcaccacaatattatgatctacaaaatttccctcaatgtgaagctaaa
cgacaactggaaatgattcaagcaaaactagattcaaagcagtatcaggaaggcttctaa
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integrated database retrieval system
