Camponotus floridanus (Florida carpenter ant): 105257202
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Entry
105257202 CDS
T03919
Name
(RefSeq) putative ATP-dependent RNA helicase me31b
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105257202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfo03019
]
105257202
03036 Chromosome and associated proteins [BR:
cfo03036
]
105257202
Enzymes [BR:
cfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
105257202
Messenger RNA biogenesis [BR:
cfo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
105257202
mRNA degradation factors
5'-3' decay
Decapping complex
105257202
Chromosome and associated proteins [BR:
cfo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
105257202
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA
CMS1
Motif
Other DBs
NCBI-GeneID:
105257202
NCBI-ProteinID:
XP_011265969
LinkDB
All DBs
Position
Unknown
AA seq
444 aa
AA seq
DB search
MMIETHINSNHMLNSGLSNKSEIDKMDDVGWKAKLKIPPKDKRIKTSDVTDTRGNEFEEF
CLKRELLMGIFEKGWEKPSPIQEASIPIALSGKDILARAKNGTGKTGAYSIPVLEQVDPR
REVIQALVIVPTRELALQTSQICIELAKHMDIKVMVTTGGTNLRDDIMRIYQKVQVIIAT
PGRILDLMDKNVANMEHCKILVLDEADKLLSQDFKGMLDHVISRLPHERQILLYSATFPL
TVKQFMEKHLRDPYEINLMEELTLKGVTQYYAFVQERQKVHCLNTLFSKLQITQSIIFCN
STQRVELLAKKITDLGYCCYYIHAKMAQAHRNRVFHDFRAGLCRNLVSSDLFTRGIDVQA
VNVVINFDFPKMAETYLHRIGRSGRFGHLGIAINLITYEDRFNLHRIEQELGTEIKPIPK
VIDPSLYVARPEDNNSMEEGNVSK
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgatgatcgaaacgcatataaactctaatcacatgttgaattctggtttatctaacaaa
tcggaaatagataaaatggatgatgtaggttggaaagccaaattaaaaattccaccaaag
gataagagaattaaaacaagtgatgttactgacacacgtggtaacgaatttgaagaattt
tgcctaaaacgcgagttattaatggggatttttgagaagggatgggagaaaccatcacca
atccaagaagctagtattcccattgcactttctggtaaagacatcttggcacgagcaaaa
aatggaactggcaaaactggagcatattcaattccagtgttggaacaagttgatccaagg
agagaagtaattcaagcattggtgattgtacctacaagagaattagcattacaaacatca
caaatttgtatcgagcttgcaaaacacatggatataaaggttatggtcaccactggagga
actaacttacgcgacgacattatgaggatttatcaaaaagtacaagtaataattgcaacg
ccaggaaggattcttgatctaatggataagaatgtggcaaatatggagcattgtaaaatt
ttagttttagatgaagcagacaaactgctgtcacaagacttcaaaggaatgttggatcat
gtcatatcaagattgccacatgaacgtcagattttgttgtattcagctacatttcctctg
actgtgaaacaatttatggagaaacacttgagagatccatatgagattaatttaatggaa
gagttgactttaaaaggcgtaacacaatattacgcttttgtacaggaacgacaaaaagtt
cactgccttaacacgttattctcgaaattgcaaataacgcaaagcataatcttctgcaat
tcgacgcaacgcgtagaattattggctaaaaaaataacagatcttggatattgctgttat
tatatacacgcgaaaatggcgcaggcgcaccgcaatcgtgtgtttcatgatttccgtgca
ggattatgccgaaatctcgtgagcagtgatctatttacccgcggtattgatgttcaagct
gtgaatgtcgtaattaatttcgactttccgaaaatggcagagacatatctgcatagaatc
ggccgatctggaagatttggccacttaggtatagcaattaacctaatcacgtacgaggat
cgcttcaatttacaccgtatcgaacaagagcttggaacagaaattaaacctatcccaaag
gtgatagatcctagtttgtatgtagcgagaccagaagacaataatagtatggaagaaggt
aacgtgtccaagtag
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