Camponotus floridanus (Florida carpenter ant): 105258686
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Entry
105258686 CDS
T03919
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cfo
Camponotus floridanus (Florida carpenter ant)
Pathway
cfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105258686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cfo03019
]
105258686
03041 Spliceosome [BR:
cfo03041
]
105258686
03009 Ribosome biogenesis [BR:
cfo03009
]
105258686
03016 Transfer RNA biogenesis [BR:
cfo03016
]
105258686
Enzymes [BR:
cfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
105258686
Messenger RNA biogenesis [BR:
cfo03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
105258686
Spliceosome [BR:
cfo03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
105258686
Complex C
U4/U6.U5 tri-SnRNP related factors
105258686
Ribosome biogenesis [BR:
cfo03009
]
Eukaryotic type
Pre-60S particles
Helicases
105258686
Transfer RNA biogenesis [BR:
cfo03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
105258686
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
Death_3
Tox-MPTase2
ATPase_2
GTF2I
Motif
Other DBs
NCBI-GeneID:
105258686
NCBI-ProteinID:
XP_011268411
LinkDB
All DBs
Position
Unknown
AA seq
1009 aa
AA seq
DB search
MANFTEDLFDVFDEHGDDVEIPDISKKIESDAGIKRQLDTEDDKSFVKKLRHDPILDDIN
LEDMICRIKVHNIETMESCMHEVAIPPEQEYVPLEHKQGKPAKEYKFILDPFQKEAILCI
ENNQSVLVSAHTSAGKTVVAEYAIACSLKDKQRVIYTTPIKALSNQKYREFHEEFKDVGL
VTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVWEETLI
LLPDNVHYVFLSATIPNARQFAEWVAHLHNQPCHVVSTDYRPTPLQHYIFPVGGDGIHLV
VDETGQFKEENFNRAMACLQNIGDAAKGDTKGRKGGLRATNSGQTNIFKMVKMIMERNFA
PVIIFSFSKKDCEVYAMQMAKLDLNTLEEKKLVDEVFNNAIDVLNDEDKKLPQVTNLLPL
LRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGK
DFRWITSGEYIQMSGRAGRRGLDDKGIVILMIDEQVSPVIGKAIVQGKPDPINSAFHLTY
NMVLNLLRVEEINPEYMLERSFFQFQNQAGIPALYNKVKELYTTYNTVNVERYDEISSYH
NIREQLDRLSGEFRSFLTQPEYLVPFLQPGRLVKVRNEFETFDWGIIVNFKKKNQKNPVK
DKTIIIIDILLHISKDSKEGNPIPCREGEEGEMEVVPVSHNLISQISSLRLYYPKDLRPS
DNRKSVLKTIREVKKRFPDGPPLLNPITDMHIEDQSFKDIVKKIEALEKRLYAHSLHKDQ
NVNVLYEQFLHKEELAVQLKQSKEEFKQAKSILQMNELKCRKRVLRRMAYCTSADIIELK
GRVACELNGADELLMTEMIFNGLFNALSVPQMVALISCFVCDEKSNEMPKSTEELSGPLR
QMQDLARRIAKVSTEANLELDEDAYVDRFKPYLMDVIYAWCKGATFLQICKMTDIFEGSI
IRCMRRLEEVLRQLCQAAKGIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atggcgaattttaccgaagatttatttgacgtttttgatgagcatggcgatgatgtggaa
ataccggacatttcgaagaaaatcgaatcggatgcgggaataaagcgacagcttgacact
gaagatgataagtcgtttgttaagaaattacgacatgatcctattctggatgacattaat
ctagaggatatgatatgtcgaataaaagtacataatatagagactatggaatcttgtatg
cacgaggttgctattccacctgagcaagaatatgtacccttagaacataaacagggtaaa
ccagccaaagaatataaatttatactcgatccattccaaaaagaagcaattttatgcatt
gagaataatcagtcagttcttgtttccgctcatacttcagctggtaaaactgttgtagcc
gagtatgcaatagcatgttcacttaaggataagcagagggtgatatacacaactccaatt
aaagcattaagtaatcagaagtatagagaatttcatgaggaatttaaagatgttggtctg
gtaacaggtgatgttactataaatccaacagctagtgtattaattatgactaccgaaatt
ttacgtaatatgctgtacagaggctcagaggtaatgcgtgaagttggttgggtaatcttt
gatgaaattcattacatgcgcgataaagaaagaggcgtggtgtgggaggagacgcttata
ttgttgccggataatgtacattatgtatttctttctgctaccataccgaatgcacgacaa
tttgcagagtgggtggcacatttgcataatcagccttgccatgtggtctctacggattac
agacctactcctttacaacattacatatttccagttggtggtgatggaattcatctggtt
gtagatgaaactggtcaatttaaagaagaaaattttaacagagctatggcctgtctgcag
aatataggtgatgcggctaaaggtgacacaaaaggacgtaaaggtggcttgcgcgctact
aatagtggacaaacaaatatcttcaaaatggtaaaaatgatcatggagagaaattttgcc
cccgtgataatctttagtttttcaaagaaagactgtgaagtttatgcaatgcaaatggcc
aaactagatttgaacacattagaagaaaaaaaattagtggatgaggttttcaataatgcg
atagatgtccttaatgatgaggacaaaaagttaccgcaagttacgaacttgctgccactt
ttacggcgtggaataggtattcatcatggtggactcttgccaattttgaaggagacagtc
gagatattattcggcgaaggtttgatcaaagcgctttttgccactgaaacattcgcaatg
ggtttaaacatgcctgcacgaacagttttgtttacggcaccccgtaaattcgatggtaag
gacttccgttggatcacatcaggtgaatatattcaaatgtccggccgtgcgggcaggcga
ggtctagacgacaaaggaattgtaatattaatgatagacgaacaagttagtccagttatc
ggtaaagctattgttcaaggaaaaccagatccaataaattctgcatttcatctgacctat
aacatggtgcttaatcttcttcgagtggaagagattaatccagaatacatgttagaaaga
agcttcttccaatttcaaaatcaagctggtattccagctttgtataataaagtaaaggaa
ttatacactacctacaataccgtgaatgttgagagatatgatgagatttcttcttatcat
aatatacgcgaacaactcgatcgtttgagcggagagtttcgatcatttttaacgcaacca
gaatatttggttccatttttacaacccggaagactagtaaaagtgagaaatgaatttgaa
acattcgattggggtattatagtaaactttaaaaagaaaaatcagaaaaatccagtaaaa
gataagactattattatcattgatattttacttcacatatcgaaagattccaaagaaggc
aatccaattccatgtcgcgaaggagaagaaggtgaaatggaagtagttcctgtttcacat
aatttaatttctcaaatcagttcactcagattatattatccaaaagacctcagaccatct
gataatagaaagagtgtattgaaaacaatacgagaagtaaagaaaagattcccagatggt
ccaccattactcaatcctattacagatatgcacatagaggatcaaagttttaaagatatt
gttaaaaaaattgaagcattagaaaaaagattatatgcacattctttgcataaagatcag
aatgtaaatgtattatatgaacaatttttacacaaggaggaattggctgtacagcttaaa
caatccaaggaagaatttaagcaggctaagtctatacttcagatgaatgaacttaaatgt
agaaagcgtgttttaagaaggatggcatattgcacatcggcggatattatagaattgaaa
ggacgtgtagcttgcgaattgaacggtgccgacgagctattaatgacagagatgatcttc
aatggtcttttcaatgctttaagtgtaccgcaaatggtggcattgataagttgttttgta
tgtgatgaaaagtcgaacgaaatgcctaaaagcacagaggaattaagcggtccactcaga
cagatgcaagatttggctcgtagaatagcaaaggtttcaacagaggccaacttggaatta
gacgaggatgcatatgtcgatagatttaaaccatatttaatggacgttatatatgcttgg
tgcaaaggcgcaacattcttacaaatttgtaaaatgacagatatatttgaaggatctatt
attagatgcatgcgtcgtttagaagaagtgcttcgacaactatgtcaagctgcaaaaggt
attggaaatacagatttggaaaataaatttagtgaagcaatcaaacttataaaacgtgat
attgtgtttgcggcgtccttatatttataa
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integrated database retrieval system
