Chitinibacter fontanus: HZU75_14175
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Entry
HZU75_14175 CDS
T06720
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cfon
Chitinibacter fontanus
Pathway
cfon02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cfon00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HZU75_14175 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cfon03021
]
HZU75_14175 (rpoD)
Transcription machinery [BR:
cfon03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HZU75_14175 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
LPD39
SPO22
GTP_EFTU
Motif
Other DBs
NCBI-ProteinID:
QLI82582
UniProt:
A0A7D5Z9J4
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Position
2960418..2962352
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AA seq
644 aa
AA seq
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MAADKKYDKENPELSGKSEPEKLDPEARKAKFKTLIVLGKERGYLTYAEINDHLPEDMLD
AEQIEGIISMISNMGIQVYDEAPDAEDLLMSDAPAAVADEDAAEEAEAALSSVDAEFGRT
TDPVRMYMREMGTVELLTREGEIEIAKRIEDGLRHMITAISACPTTIGQIIDLVDQGLND
EIRIDDVIDGFIDPNAVEEEEQEPDLPDPDAIADESDGDEDEDEDDGGAAAASANLELLK
TQARECFERVRDLYTKMLAALDKDGTNSPKYQEYQQAIAAEFQTIRFSARQVESLCDVMR
GMVDDIRTHERQIMDLCTRRVGMPREHFIKVFPGRETDLTWVPEEIAAEHSYSGVMYRYK
HAIMEKQQKLNELQDDSRISIKELKEISRQMSTGEAKARRAKREMIEANLRLVISIAKKY
TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV
HMIETINKMNRIQRQILQETGLEATPEELAERMEMPEDKIRKILKIAKEPISMETPIGDD
DDSHLGDFIEDQNNMAPADAAVYAGLREATKEVLDTLTPREAKVLRMRFGIDMSTDHTLE
EVGKQFDVTRERIRQIEAKALRKLRHPTRSERLKSFIENAASEQ
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagataaaaaatacgacaaagaaaaccctgaattgagcggcaaatcagagcca
gaaaagctggatcctgaggcgcgtaaggccaagttcaaaacgctgattgtgctcggtaaa
gagcgcggctacctcacgtacgcagaaatcaacgaccacctccctgaagacatgttggat
gccgagcaaatcgaaggcattatcagcatgatttcgaatatgggcattcaggtctacgat
gaagcgccagatgccgaagacttgctgatgtctgacgcgccagccgccgtcgccgacgaa
gatgccgctgaagaagccgaagctgcgctgtcatcggttgatgctgagtttggccgcaca
actgacccggtccgcatgtatatgcgtgaaatgggcaccgttgagctgttgacgcgcgag
ggcgagattgaaatcgccaaacgcattgaagatggcttgcgtcacatgattaccgccatt
tctgcgtgcccgactacaattggtcaaattatcgacttggtcgatcagggcttgaacgac
gaaatccgcatcgatgatgtgattgatggatttatcgatccgaacgccgtcgaggaagaa
gagcaagagccagatctacccgatccagacgcaattgctgatgaatcggatggcgacgaa
gacgaagatgaagacgacggtggtgctgctgccgccagtgccaatcttgagttactgaaa
acgcaagcgcgcgagtgtttcgagcgtgtgcgtgatctgtacaccaagatgctggcagct
ctggataaagacggcaccaatagtccgaaataccaagaataccaacaagcaattgcagcg
gaattccaaacaattcgcttctctgcgcgtcaagtagagtctttgtgtgatgtgatgcgt
ggcatggtcgatgatattcgaacccatgagcgccagatcatggacttgtgtactcgccgc
gtgggtatgccgcgtgagcactttatcaaagtgttccctggtcgtgaaactgatctgact
tgggtgccagaagaaattgctgccgagcatagctattccggcgtgatgtatcgctacaaa
cacgcgatcatggaaaagcagcaaaagttgaacgagctgcaagacgattcgcgcatcagt
attaaagaattgaaagaaatttcgcgtcaaatgagtaccggtgaagcgaaagcgcgccgt
gcgaaacgtgagatgatcgaggctaacttgcgtctcgtgatttcgattgccaaaaaatac
accaaccgcggtttgcaattccttgatttgattcaggaaggcaatatcggcttgatgaaa
gcagtggataaattcgaatatcgtcgtggctataagttttcaacttatgccacttggtgg
atccgtcaggcgattacccgctcgattgccgaccaagcgcgcacgattcgtatcccggtg
catatgatcgaaacgatcaacaaaatgaaccgtatccaacgacaaatcctgcaagaaact
ggtttggaagcgacgccggaagaattggctgaacgcatggaaatgccggaagacaaaatc
cgcaagattttgaaaatcgccaaagaaccgatttcgatggaaacaccgattggcgatgat
gatgattcgcacctcggtgattttatcgaagaccagaataatatggcgccagcagatgcg
gccgtatatgcgggtctacgtgaagccactaaggaagtgctcgacacactaacgccacgc
gaagctaaagtactgcgtatgcgtttcggtattgatatgagcaccgatcacacgctggaa
gaggttggtaagcagtttgatgtgacgcgtgagcgtattcgtcagattgaagccaaggca
ctgcgtaagctgcgtcacccaacgcgttcagaaagattgaaatctttcattgaaaatgcg
gccagtgagcagtaa
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